Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14440 686 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 676 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT1G30100 639 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 602 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G24220 507 / 9e-176 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 292 / 8e-92 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 267 / 1e-82 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 88 / 3e-18 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023673 [exp] 501 / 4e-173 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 463 / 1e-158 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10042482 [exp] 422 / 2e-145 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10042481 [exp] 346 / 3e-118 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10035696 [exp] 283 / 5e-88 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 268 / 4e-81 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 257 / 1e-78 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 254 / 3e-74 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 174 / 4e-49 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393800 [exp] 722 / 0 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G112400 [exp] 713 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 644 / 0 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.003G176300 [exp] 557 / 0 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.005G069100 [exp] 296 / 6e-93 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 293 / 9e-92 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 278 / 1e-86 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 278 / 1e-86 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 273 / 1e-84 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265400 [exp] 269 / 3e-83 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10026185 pacid=23156560 polypeptide=Lus10026185 locus=Lus10026185.g ID=Lus10026185.BGIv1.0 annot-version=v1.0 ATGATCGCCTCTCCTCCTCCTTCTTCTTCTTCTTCTTCAATCTCCCACCATAGAGTCAGTCGACGGTGCTCGAAAATCCAATCCTCTTTACAAACTCCTT CCATTGCCCATTTCCCCAAACACTTTCCTCCTCCTCCTCCTCCTCCGCAAAATAAGCCGCTATTACCAGTGTTGGTGGAGGAGAAAACACAAAGAAAGCC TCCAAAATGGAACCTTCTACAAAGAGCTGCTTCATTCGCTTTGGATGCCGTCGAATCCGCTCTTGTCGCTGTGCTGTTGGAGGATACGAGTCCTGCTGTC TTGGTTCTAGGCGGTTTCGCGGGGACGAGCCGGCTGGTTCAGGAGCGGGAATTGGGTCGACCGGTTTTCCCTAAGGCCATCGGCGAGCTCCACGGTCACT CCGGAATCGCGAGGCTCATGCTCTTCTGCGCGCGCGGACTCTTCGGAATCGTCGATCCTTCCCAAGGAACCGGAGTCGCTAACGCCGGCCTCGTCTATTT TGCTGGACGCCTACTCGCTATGTCGGAAGACGATTTGCCTTACCACGTCCGCGTCCTTCCCTCCGGTGACCTGGAAACCGCCGGCCGATTCGATTTCGAC GGCCAGCTCCAGAGCACGATGATCGCACACCCGAAAATTGACCCGGTCACCGGCGAAATGTTCGCACTCAGCTACGACGTCGTCAAGAAGCCGTACCTCA AGTACTTCCGGTTCTCTGCGTCGGCGGAGGAAGAAGGCAATCAGAAAATCGAGAAATCCCCTGATGTGGAGATAGAGTTGGATCAACCGACGATGATGCA CGATTTCGCCATAACGGAGAATTTCGTGGTGATTCCGGATCAGCAGGTGGTTTTCAAGCTACAGGAGATGATCCGAGGCGGGTCGCCGGTGATCTACGAC AAGAACAAAATCTCGCGATTCGGGATTCTGGACAAGAATGCCGTAGACGGATCGGAAATCAAATGGATTGAAGCGCCCGACTGTTTCTGCTTCCACCTGT GGAACGCATGGGAGGAGCCAGAGACAGACGAGGTGGTGGTGATCGGGTCGTGTATGACTCCACCAGACTCCATTTTCAACGAGAGCGACGAGGAATTGAG AAGCGTCCTCTCGGAGATTCGTCTAAATATAAAGACCGGGAAATCGACTCGCCGTCCGATCATATCGGAAGAGCAAATGAATCTGGAGGCAGGGATGGTG AATCGCAACATGCTAGGGAGGAAAACACAGTTCGCATACTTAGCTCTTGCGGAGCCATGGCCTAAAGTGTCCGGGTTCGCGAAAGTGAACCTCGCAACCG GAGAAGTCGAGAAGCATATATATGGAGAAGGAAAGTACGGAGGGGAGCCTCTGTTTCTTCCAAACACATCATCGTCATCTTGTAATAGGGAAGACGACGG GTACCTTCTGGCATTCGTTCACGACGAGAAGGAGTGGAAATCAGAGCTCCAGATCATAAACGCCATGGACATGAAGGTTGAAGCCACAGTAGAGCTCCCT TCCCGGGTCCCTTATGGGTTCCACGGCACGTTCATAAGCGCCAAGGATTTGGAGAATCAGGCAGAGAAGTGTATGTGA
AA sequence Show only first row Show all	>Lus10026185 pacid=23156560 polypeptide=Lus10026185 locus=Lus10026185.g ID=Lus10026185.BGIv1.0 annot-version=v1.0 MIASPPPSSSSSSISHHRVSRRCSKIQSSLQTPSIAHFPKHFPPPPPPPQNKPLLPVLVEEKTQRKPPKWNLLQRAASFALDAVESALVAVLLEDTSPAV LVLGGFAGTSRLVQERELGRPVFPKAIGELHGHSGIARLMLFCARGLFGIVDPSQGTGVANAGLVYFAGRLLAMSEDDLPYHVRVLPSGDLETAGRFDFD GQLQSTMIAHPKIDPVTGEMFALSYDVVKKPYLKYFRFSASAEEEGNQKIEKSPDVEIELDQPTMMHDFAITENFVVIPDQQVVFKLQEMIRGGSPVIYD KNKISRFGILDKNAVDGSEIKWIEAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDEELRSVLSEIRLNIKTGKSTRRPIISEEQMNLEAGMV NRNMLGRKTQFAYLALAEPWPKVSGFAKVNLATGEVEKHIYGEGKYGGEPLFLPNTSSSSCNREDDGYLLAFVHDEKEWKSELQIINAMDMKVEATVELP SRVPYGFHGTFISAKDLENQAEKCM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Lus10026185 [exp]	0	1
AT3G57680			Peptidase S41 family protein (...		Lus10011300 [exp]	10.3	0.6546
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	26.4	0.6273
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	35.8	0.6148
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	36.5	0.6223
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	56.4	0.5898
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	70.0	0.5829
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	74.5	0.5634
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030862 [exp]	84.3	0.5579
AT2G15220			Plant basic secretory protein ...		Lus10014111 [exp]	86.2	0.5697
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035485 [exp]	177.9	0.4847

Compare expression of checked genes

Lus10026185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.