Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68100 302 / 1e-98 IAR1 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042480 [exp] 487 / 3e-171 AT1G68100 328 / 7e-108 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139900 [exp] 347 / 4e-116 AT1G68100 403 / 5e-137 IAA-ALANINE RESISTANT 1, ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10026186 pacid=23156556 polypeptide=Lus10026186 locus=Lus10026186.g ID=Lus10026186.BGIv1.0 annot-version=v1.0 ATGCGACGGACCTTCATGCAGCAGCTGATTCTATTGGCGATGGCTGTCGTCGCCTCCGGGTTTTTGGTAGATCTTTGTTCTGGTGACGGATTATTTACCT CGCCTGCGCACGACCACCACCACCATCACGGCTCCCAGTGTGGCGGCCATCATCATGATCATGATCATGAAGACCATCATCACCACCATCATGCCAAAGA AACGGAGTACAAATTACCCGAGGAATTGGCGGAAGAAGAGGATATGAAACTCTATGGCTTTGGTAACTACCATGATCACCAACACGAACACCATGTAGAT TCGGATTCCAAGCTTTTTGGTCTAAGTGGACAGCACACTCATTCGCATGATGATTTCAGCCACGATCATTCGGGGCATGAACATGTGCAGGCACATTCAC ATTCTTTGGAGGATCTTTCTGTTGGATTGTCCATTTTAGCTGGCATTGTAGTCTTTCTTCTTGTGGAGAAGGCCGTGAGATATGTTGAGGATAACTCTAG AGGAGCTGGTGTTTGGGGCCATGCTCATCACCACCACCACCACCACAAGAGCAATAAGAAACTGAAGGATGAGGATGATGGTCATGAAAAGACAATTTCA AGTAGTTCTCATGGTACTGAAGAAGCTTCTGATGGGATTTCAGATGGCATGTCAAATGGGAACAAGTCGAGTCAACAAGAGACTCTTATTCACAGGAGAA AAGGCAAAGGCGAAGAATCAGATGAAACTACTGTAGATAGCTCTAATGCTATCAAACTATCAGAGGAAAAAGAAGTGGCAAAGTCTCCCTCTAATCTGGT GTTTGGCTATCTTAATTTGTTCTCAGACGGTGTTCATAATTTTACTGATGGAATGGCTCTTGGTAGCGCATTTCTGCTGTATGGATCTGTTGGGGGGTGG TCTAGAACTCTGTTTCTGCTAGCACATGAGCTCCCTCAAGAGGTGGGTGATTTTGGAATCTTGGTGAGGTCTGGTTTCAGTGTGTCCAAAGCTCTTATCT TCAACTTCCTGTCAGCATTGCTTGCTCTTGTTGGAACTGCACTGGCTCTGATGTGGGGAAAAGATCCAGGACAGTCTTCTTTGATCGAGGGATTCACAGC AGGAGGGTTCATATACATTTCAGCGGCCGGAGTGCTGGCCGAAATGAACAATAACGGCAGCAGCACAACTTTGAAAAGCACAGCAGTTCAAGTAGCGTCC CTTGTGTTGGGAATGTCTGTCGCCCTTTGTATTTCGCTTGTAGAATGA
AA sequence Show only first row Show all	>Lus10026186 pacid=23156556 polypeptide=Lus10026186 locus=Lus10026186.g ID=Lus10026186.BGIv1.0 annot-version=v1.0 MRRTFMQQLILLAMAVVASGFLVDLCSGDGLFTSPAHDHHHHHGSQCGGHHHDHDHEDHHHHHHAKETEYKLPEELAEEEDMKLYGFGNYHDHQHEHHVD SDSKLFGLSGQHTHSHDDFSHDHSGHEHVQAHSHSLEDLSVGLSILAGIVVFLLVEKAVRYVEDNSRGAGVWGHAHHHHHHHKSNKKLKDEDDGHEKTIS SSSHGTEEASDGISDGMSNGNKSSQQETLIHRRKGKGEESDETTVDSSNAIKLSEEKEVAKSPSNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGW SRTLFLLAHELPQEVGDFGILVRSGFSVSKALIFNFLSALLALVGTALALMWGKDPGQSSLIEGFTAGGFIYISAAGVLAEMNNNGSSTTLKSTAVQVAS LVLGMSVALCISLVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10026186 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	12.3	0.7790
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	14.5	0.7044
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	22.7	0.7766
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	22.8	0.7757
AT1G75140			unknown protein		Lus10007163 [exp]	28.0	0.7529
					Lus10033036 [exp]	29.2	0.6333
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	31.9	0.7684
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	32.6	0.7519
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	39.0	0.7522
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	43.9	0.6987

Compare expression of checked genes

Lus10026186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.