Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08420 420 / 5e-146 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042479 [exp] 607 / 0 AT5G08420 449 / 7e-158 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065500 [exp] 479 / 1e-169 AT5G08420 416 / 1e-144 RNA-binding KH domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026187 pacid=23156594 polypeptide=Lus10026187 locus=Lus10026187.g ID=Lus10026187.BGIv1.0 annot-version=v1.0 ATGGCGGACGCAGCAGGAAATAGTGAAATACAGGTAAAGGATGTGAAGAAGAAGCACAAGGGCAAGCACGACAAGCCGAAACCATGGGACGATGATCCTA ACATCGACCGTTGGAAAGTTGAGAAGTTCGACCCTTCATGGAACGAAGGCGGCATGCTCGCCGAGAGCTCCTTTTCCACCCTGTTTCCTCAGTACAGAGG AAAGTACTTGCAGGATGTTTGGCCAATGGTGAAATCTGCATTGAAAGAATATGGCATTTCAGGCGAACTGAACCTCGTTGAGGGTTCGATGACTGTTTCA ACTACTATCAAGACTAGAGATCCTTATATAATCATCAAAGCGAGGGATCTTCTTAAGTTGCTATCCAGAAGTGTCCCTGCACCTCAGGTATGCGCAACCC TTTCTGTTACTGCCTTACAGTTGAGCTGGTCTAAAGCTCGGGCTATTAAGATTCTTAATGACGAAATGCAATGCGATATCATCAAGATTGGTGGTTTTGT TCATAACAAGGAACGTTTTGTCAAACGAAGGCAACATCTTGTTGGGGCAAATTCAGCTACTTTAAAGGCACTTGAAATTTTGACAGGCTGGTTTATTCTA GTCCAGGGGAACACCGTTGCTGCTATGGGTTCATTTAAAGGATTAAAACAAGTTAGAAGGATTGTGGAGGAATGTATGCAGAACAAGATGCATCCTGTGC ACCATATAAAAATTCTTATGATGAAAAAAGAGCTTGAACAAAACCCCTTGCTGAAGAATGAAAACTGGGACAGATTTCTTCCGAAATACAATAAGAAGAA TGTGCAACGAAAGAAGAAGAAGAAGACAGAAAAGAAGGAATACACTCCATTTCCTCCTCCCCAACCGCCTAGTAAGGTTGATATTCAATTAGAGACAGGA GAATACTTCATGAGTGACCACAAGAAGCAATCTAATGCATGGAGAGATAAACTGGAGAAGCAGGCCCAAAAGTCTGCTGAAAACAAGAGAAAAAGAGAAG AGGCATTTAAACCTCCAGAGGAACCCGTCAAGGCACAACACTCAGATGACACCGGCAAAGACCTAGCTAGTATGACCGCTTCTGTCAAGCAAAAAGCAAA AGATTTCGGGAAGAAGAAAAGCGGAGAGAATGTCAACGCAGAGGATTATATAGCAGTAGCTTCAGGTGAAACATCCAAGAAGAAAAAAGCAAGGAGAAGT TAG
AA sequence Show only first row Show all	>Lus10026187 pacid=23156594 polypeptide=Lus10026187 locus=Lus10026187.g ID=Lus10026187.BGIv1.0 annot-version=v1.0 MADAAGNSEIQVKDVKKKHKGKHDKPKPWDDDPNIDRWKVEKFDPSWNEGGMLAESSFSTLFPQYRGKYLQDVWPMVKSALKEYGISGELNLVEGSMTVS TTIKTRDPYIIIKARDLLKLLSRSVPAPQVCATLSVTALQLSWSKARAIKILNDEMQCDIIKIGGFVHNKERFVKRRQHLVGANSATLKALEILTGWFIL VQGNTVAAMGSFKGLKQVRRIVEECMQNKMHPVHHIKILMMKKELEQNPLLKNENWDRFLPKYNKKNVQRKKKKKTEKKEYTPFPPPQPPSKVDIQLETG EYFMSDHKKQSNAWRDKLEKQAQKSAENKRKREEAFKPPEEPVKAQHSDDTGKDLASMTASVKQKAKDFGKKKSGENVNAEDYIAVASGETSKKKKARRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	0	1
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	5.8	0.8383
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	6.3	0.8789
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	6.9	0.8899
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	7.0	0.8771
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	9.5	0.8576
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	10.8	0.8799
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	11.4	0.8858
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	16.5	0.8846
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	17.5	0.8539
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	19.4	0.8603

Compare expression of checked genes

Lus10026187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.