Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14570 86 / 2e-19 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT5G13000 78 / 1e-16 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G05570 73 / 1e-14 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 70 / 9e-14 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT2G13680 68 / 5e-13 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G59100 65 / 5e-12 ATGSL11 glucan synthase-like 11 (.1) AT5G36870 62 / 5e-11 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT1G06490 60 / 2e-10 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT4G03550 57 / 3e-09 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT3G07160 50 / 5e-07 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042478 [exp] 138 / 3e-37 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2) Lus10013744 [exp] 77 / 4e-16 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 77 / 4e-16 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10037469 [exp] 75 / 3e-15 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 75 / 3e-15 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10020750 [exp] 64 / 1e-11 AT1G06490 2003 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10007327 [exp] 64 / 1e-11 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10020893 [exp] 63 / 2e-11 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10001056 [exp] 62 / 8e-11 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095100 [exp] 99 / 1e-23 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.001G230000 [exp] 78 / 1e-16 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 78 / 1e-16 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 77 / 3e-16 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 62 / 4e-11 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.005G203500 [exp] 61 / 7e-11 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 59 / 4e-10 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.013G131300 [exp] 56 / 5e-09 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.011G052400 [exp] 49 / 1e-06 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.001G011900 [exp] 42 / 0.0002 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026188 pacid=23156515 polypeptide=Lus10026188 locus=Lus10026188.g ID=Lus10026188.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGTCTGGATAGTCCTTACATGGTTGCTGTTGCAATCTACATGACAACTAATGGAGTTGAGATGGTGTTATTTGTTGTTCCTGCTGTACGAA AGTTCATTGAGATCTCAAATTGTCAGATTCAGAACTTTCTCTTGGTGGACACAGGTAAAGTTGGGCATAAAGGAGACCACAGACAAAAACAGCAACCAAG ATTATATGCTGGTCGTGGGATGCAAGAAACCCAGGTTTCTGTTTTCAAGTACATTACTTTTCCTGCCATACCTTTCACTTTGATTTGTTTGCCTTCCCAG TTTGAGTTTGCGAAATCTAAAAGTTGTTTTGTGCAGGGATTTGAAAGTGGAACAAGGACAAGAGCTGGCAGTCATGGTGGAACGACGAACAAACCCATCT CCGGCGAGCAGGGGTTGGGGATAGACTTGGCTGTGGACATGGGAAGGCAACTGTTCAGTGCAAAATACCATTTGGGATTCAGGCTTTTCAAGACATTCCT CTTTATTGCAGTTGTGGCCATCATAGTAACTCTATCACTAGCTGACAAGCTTTCGTTGAGGGATTTGATCGTCTGCTGTCTGGCATTTCTGCCAACAGGA TGGGGACTTCTATTGATAGCACAAGCAGTGAGGCCGAAGATAGAGTAA
AA sequence Show only first row Show all	>Lus10026188 pacid=23156515 polypeptide=Lus10026188 locus=Lus10026188.g ID=Lus10026188.BGIv1.0 annot-version=v1.0 MEAGLDSPYMVAVAIYMTTNGVEMVLFVVPAVRKFIEISNCQIQNFLLVDTGKVGHKGDHRQKQQPRLYAGRGMQETQVSVFKYITFPAIPFTLICLPSQ FEFAKSKSCFVQGFESGTRTRAGSHGGTTNKPISGEQGLGIDLAVDMGRQLFSAKYHLGFRLFKTFLFIAVVAIIVTLSLADKLSLRDLIVCCLAFLPTG WGLLLIAQAVRPKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	0	1
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	2.4	0.9832
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	2.4	0.9812
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	4.2	0.9663
					Lus10008289 [exp]	4.9	0.9676
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	5.5	0.9694
					Lus10036765 [exp]	6.3	0.9694
					Lus10006395 [exp]	7.1	0.9694
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034047 [exp]	7.5	0.9258
AT2G16190			unknown protein		Lus10011284 [exp]	7.7	0.9694
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	8.4	0.9694

Compare expression of checked genes

Lus10026188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.