Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14096 80 / 3e-16 F-box/RNI-like superfamily protein (.1) AT1G66310 79 / 5e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 79 / 7e-16 RNI-like superfamily protein (.1) AT5G56440 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 77 / 3e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G60400 74 / 2e-14 F-box/RNI-like superfamily protein (.1) AT1G69630 72 / 1e-13 F-box/RNI-like superfamily protein (.1) AT5G44950 70 / 6e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66320 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT5G18780 69 / 1e-12 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042477 [exp] 561 / 0 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 461 / 8e-163 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 262 / 8e-85 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 259 / 3e-83 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 234 / 4e-74 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 230 / 4e-72 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10024695 [exp] 224 / 3e-70 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10002819 [exp] 221 / 4e-69 AT5G02910 77 / 1e-15 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 221 / 8e-69 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 147 / 1e-40 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 124 / 5e-32 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 121 / 4e-31 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 99 / 8e-23 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 96 / 9e-22 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 95 / 1e-21 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 66 / 1e-11 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.014G039700 [exp] 59 / 1e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 58 / 4e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002001 [exp] 57 / 5e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026190 pacid=23156568 polypeptide=Lus10026190 locus=Lus10026190.g ID=Lus10026190.BGIv1.0 annot-version=v1.0 ATGTCCGGGACCACGCTCCCTGGAGAGGATTCCACGGACAGGCTAAGCAGTCTTCCGCACTCCATTCTGTATCACATCCTTTCATTTCTGGACACGAAAT CTGCGGTTCAGACATCTGTACTATCCCGATTGTGGAGATGCGTATGGAAACACGTTCCTGTTCTCGATCTGGATTTCTATTCATTCGTTGAAGATTCGAG TTTCAAATCTTTCGTCGACAAGGTTTTGTCAATCCGCTATCGCCTTCCTCTCAGCAAGATCAGCTACGTGGACGCTGTGAATTCACTTGAAGAAGATAAC AGCCTTTGTGTAAAGGTCATGAGATATGCCGTCTCTCAAGATATTCAACATTTGGCGATGCTTCTGTATCGTGATTCGGATGACTGCTTTAAATTCTCTG AGTTGTTTAACTCACTAGCAGGCTGCAATCTGAAAATTTTAGAGCTGAGCGGTTTTGACCTGGATAGTGGATTTCAGTCTTTTCGGTTTCAGCTGATGAC AACCTTAGAGTTGCAGGGGTGTCTGCTAAGCCCTGACCAGGGTCAGGGGACTTTCGATCCTTTCTCTAATTTTCCGAGTCTGAAAACATTGGTGCTGGAT ACTTGTCCCGCCGATTTCGATAACTATGACAGATTCAGGATTTATGGACCACAGTTGCAGAGTCTCAAATTGGTGCATATGGACGTGCGCAAGATGGAAA TTACTGCTCCCAAGCTCAAATCCTTCACCCTTTGGGATTTTGTGAATGATTTGAGATTCTCAAAGCTAAGCCTTCCTTCCCTTGATCACGTTGATATTCG GGTATGTGGCAGGCACACGTTCTATCCAACTGATAAGAAAGACTGGGTCTTCTTGTTCCAAGGTCTTCATAATGTGAAATCTTTGACACTAAACGATAGG ATCATCGAGGGGCTCGTTGATATTTCCAAGTTCTTGGAACAACTACACTCTCCTTTTAAAAGATTGGAGGAGTTGATTATTTGGTGCAACAATAAACCTC ACAAAGTGGTGAACTCCGACAACATACCTTACAACGTGGTGAATTACTTTCTTAAAGGATCTTCAGCTACAAATCCAAGTATCAAGATTTTGGTAGAGGA TTTGCCATACCAACTGCGGTAG
AA sequence Show only first row Show all	>Lus10026190 pacid=23156568 polypeptide=Lus10026190 locus=Lus10026190.g ID=Lus10026190.BGIv1.0 annot-version=v1.0 MSGTTLPGEDSTDRLSSLPHSILYHILSFLDTKSAVQTSVLSRLWRCVWKHVPVLDLDFYSFVEDSSFKSFVDKVLSIRYRLPLSKISYVDAVNSLEEDN SLCVKVMRYAVSQDIQHLAMLLYRDSDDCFKFSELFNSLAGCNLKILELSGFDLDSGFQSFRFQLMTTLELQGCLLSPDQGQGTFDPFSNFPSLKTLVLD TCPADFDNYDRFRIYGPQLQSLKLVHMDVRKMEITAPKLKSFTLWDFVNDLRFSKLSLPSLDHVDIRVCGRHTFYPTDKKDWVFLFQGLHNVKSLTLNDR IIEGLVDISKFLEQLHSPFKRLEELIIWCNNKPHKVVNSDNIPYNVVNYFLKGSSATNPSIKILVEDLPYQLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	0	1
AT5G02280			SNARE-like superfamily protein...		Lus10010836 [exp]	1.4	0.8312
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	1.7	0.8321
AT3G48820			Glycosyltransferase family 29 ...		Lus10043193 [exp]	3.7	0.8197
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	3.9	0.8230
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	4.8	0.7931
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	5.7	0.8284
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10014055 [exp]	5.7	0.7839
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	6.6	0.8097
AT5G19370			rhodanese-like domain-containi...		Lus10026105 [exp]	12.5	0.8067
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	13.0	0.7970

Compare expression of checked genes

Lus10026190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.