Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14580 392 / 9e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 144 / 1e-38 unknown protein AT1G07740 143 / 4e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46100 135 / 5e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 134 / 7e-34 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 133 / 9e-34 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 130 / 3e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 130 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 127 / 7e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G18475 124 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042476 [exp] 747 / 0 AT3G14580 400 / 7e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 156 / 5e-42 AT4G01400 570 / 0.0 unknown protein Lus10015397 [exp] 141 / 3e-37 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 137 / 4e-35 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 134 / 4e-34 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 134 / 1e-33 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 132 / 2e-33 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 130 / 1e-32 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 126 / 5e-32 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379500 [exp] 475 / 2e-167 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 159 / 8e-44 AT4G01400 576 / 0.0 unknown protein Potri.010G148700 [exp] 157 / 3e-42 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 137 / 5e-36 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 138 / 2e-35 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G108500 [exp] 134 / 8e-35 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 133 / 2e-34 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G031600 [exp] 133 / 4e-34 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G154800 [exp] 133 / 1e-33 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 132 / 3e-33 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026191 pacid=23156386 polypeptide=Lus10026191 locus=Lus10026191.g ID=Lus10026191.BGIv1.0 annot-version=v1.0 ATGATCCGCCATTTCCATCTTCACAAAATACCTCGCAAGCTATTCTGCTCTCACTCAGGTTTTTCATCAACTCTCACAACCCAAATTCCTTCCTCTTCTT CTTATTATTATTCCACAATCCAATCAGCTGCAGCTCCTCATCCCAAACTCAGTCGCAAAGACTGGCTTTCCCCCAACGAAGTTCTCAAAATCTTCGAATC TATCTTCGACCCAATCTCCCTCACATCCTCCTGGACTCAATACTCCCTCCGCCGTGACTTCAAGCCAAACGAACCCCTCCTCACTCTCCTCATCACCAAA CTCGGCCACTCCAAAAACTTCGACGCCATCGAAACCGTCATGGAAAACATCAAGCTTCGCAAGCTCCCACTCGCCAATCCCTTGTCCGACGACTTCTTCT ACAACGTCATCAAGATTTACGGCCATTCCGCCGGCAGGATCAGGAAGGCGATCGAAACTCTGCTGGACATGCCTCACCTTTTCAACTGTTGGCCCAAGGT AAAGACCTTCAACCTGGTTCTGAACTTGCTGGTATCCGCCAAGATCTTCGACGTTGCTCGGGACGTTTATTTAAGAGCTCCGATGTTAGGTGTTGAAATC GACGCTTGTTGTCTCAACATCCTGATCAAGGGGATGTGTGAGAATGGAGATTTGGAAGGTGCACACAAGGTACTCGACGAATTTCCTCAACAGAGGTGTC TTCCGAATGCCAGGACTTTTGCGACTTTGATGCACTGTTTGTGCAGTAAAGGGGATTTGGATGCTGTATTCGAGCTGCTGGAGAGGATGGAGAGGGAAGG AGTGGATGCAGATGCGGTGACGTTTAATGTTGTGATCTCGGGGTTGAGGAAACAAGGGAGGATTGAGGAAGGAATGACGGTTTTGGAGGGGATGAAAGGG AAAGGGTGTGAACCCAATGAAGCATCGTATCAGGAGGTTTTGTATGGTTTGCTTGATGATGGGAGATTCGTTGAGGCGAAAGAGTTTGCAGGTCGAATGG TTTGTCAAGGGTTCAACCCAAGTTTTGTATCGTATAAGAAGCTGATCCATGGGATTTGTGGAGAAGGGTTGATTCGGGAGGAATTGGACTGGGTTTTAAA GCAGATGGTGAAGCAAGGGTTTGTTCCTAAAATGAGTTCGTGGAAGCAGATGGTTCAGACTGTGTTTCCTGTTGGTAGCGCATCAGAGTTTTCATTGACA AGTGTTATTGGCAGCTAG
AA sequence Show only first row Show all	>Lus10026191 pacid=23156386 polypeptide=Lus10026191 locus=Lus10026191.g ID=Lus10026191.BGIv1.0 annot-version=v1.0 MIRHFHLHKIPRKLFCSHSGFSSTLTTQIPSSSSYYYSTIQSAAAPHPKLSRKDWLSPNEVLKIFESIFDPISLTSSWTQYSLRRDFKPNEPLLTLLITK LGHSKNFDAIETVMENIKLRKLPLANPLSDDFFYNVIKIYGHSAGRIRKAIETLLDMPHLFNCWPKVKTFNLVLNLLVSAKIFDVARDVYLRAPMLGVEI DACCLNILIKGMCENGDLEGAHKVLDEFPQQRCLPNARTFATLMHCLCSKGDLDAVFELLERMEREGVDADAVTFNVVISGLRKQGRIEEGMTVLEGMKG KGCEPNEASYQEVLYGLLDDGRFVEAKEFAGRMVCQGFNPSFVSYKKLIHGICGEGLIREELDWVLKQMVKQGFVPKMSSWKQMVQTVFPVGSASEFSLT SVIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14580			Pentatricopeptide repeat (PPR)...		Lus10026191 [exp]	0	1
AT1G75140			unknown protein		Lus10010815 [exp]	4.4	0.7974
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	8.3	0.7646
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	17.3	0.7648
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014619 [exp]	18.8	0.7289
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	28.6	0.7348
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	33.0	0.7355
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	37.1	0.6925
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	40.4	0.6771
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	50.9	0.7258
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	56.4	0.7238

Compare expression of checked genes

Lus10026191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.