Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14590 752 / 0 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G53590 751 / 0 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 84 / 2e-16 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 83 / 2e-16 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 79 / 7e-15 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 77 / 2e-14 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 75 / 7e-14 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G19830 75 / 2e-13 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G18370 74 / 2e-13 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G50260 74 / 2e-13 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042475 [exp] 1359 / 0 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10005578 [exp] 986 / 0 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013710 [exp] 973 / 0 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005069 [exp] 87 / 2e-17 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10013563 [exp] 86 / 6e-17 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 85 / 7e-17 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 82 / 7e-16 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 80 / 2e-15 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009032 [exp] 77 / 4e-14 AT3G18370 907 / 0.0 C2 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379800 [exp] 805 / 0 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 99 / 3e-21 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 91 / 9e-19 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 88 / 9e-18 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 87 / 1e-17 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.018G124000 [exp] 84 / 1e-16 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 81 / 1e-15 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 76 / 3e-14 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 75 / 7e-14 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 74 / 2e-13 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10026192 pacid=23156498 polypeptide=Lus10026192 locus=Lus10026192.g ID=Lus10026192.BGIv1.0 annot-version=v1.0 ATGGATTTTGGAGAGATTTCGGTTATGTACCATGTGGGCTTGGTCCTGTTTCTGCTGTGGTTGCTCTCTTGCTTCGACCTCACTCACCCTATCGCTTTCT TTCTATCTCTCATTTATCTCTATCTGTTGACAATAATGGCTATAGAAGGGAGAATGATGCTGTTTAATCCAATGTATCTTGAGTTGATTCTTGCGATGTA TCTTGAGTTGATTCTTGTTAACTCTTTTGGGAAGGTTCATGAGAGATATCTAACGAAATTGAGGAAGAAACTGCAGTACGAAAGAACGAAACAAGCTAAT CGGAAGAGGGTGCTCTCTGATTCTGAAACAGTGAGGTGGCTGAACCATGCTGTGGAAAAGATATGGCCCATTTGTATGGAAGAGATCACTTCACAGAAGA TTCTTCTCCCCATCATTCCTTGGTTTATGGATAAGTATAAACCATGGACCGCTAAAAAGGCAGTGGTTCAGCATTTATATATGGGGAGAGACCCGCCAAT GTTAACAGATATGAGGGTTCTTCGCCACTGTACTGGCGATGATCACTTGGCATTGGAAATGGGACTAAAATTTTGCACAGCTGATGACATGAGTGCAATT CTTGCTGTGAAATTAAGGAAAATGCTGGGATTTGGGATGTGGACAAAATTGCATATCACAGGCATGCAAGTGGAGGGAAAGGTGTTGGTTGGAATAAAAT TTCTACGTCGCTGGCCTTTCATTGGACGTTTACGAGTATGCTTTGCTGAGCCACCCTATTTCCAAATGACAGTAAAACCCATCTTTACTCATGGGGTCGA TGTTACTGTGCTTCCAGGGATTGCTGGGTGGCTGGACAAACTTCTCTCAATGGCATTTGAGCAGACTCTGGTTCGGCCCAATATGCTAGTAGCTGACGTG GAGAAATTAGTTTTTCCTTGTGAAGAAAATTGGTTCTCTGTGCATGAGAAGAAACCCATTGCTTTCGCGAAACTTGAAGTTATCAAGGCATCTGACATGA AACCATCAGATTTAAATGGTTTAGCTGATCCATACGTGAAAGGGAAACTTGGTCCATATGGATTCAGAACAAAGACCCAAAGGAAAACTTTGGCTCCAAA ATGGCTCGAGGAATTCGAAATTCCTGTTTTTACATGGGAATCACCAAATGTGTTAGCAATTGAAGTTTGTGACAAGGACCACTTCATTGATGATTCCCTT GGGAATTGTACTGTTACTATCAATGATCTAAGAGATGGTGAAAGACATGACATGTGGTTGCCCCTTCAGAACATCAAAAGTGGGAGACTGCATCTCGCGG TAACTGTCCGCGAAGTAAAGGAGGACGATGCGTATCCCGTCGAAGGAGAAAACTTGAACAAGCAAGAAGTTCAGGAATCGTTAGCGAACGACACTGTTAA TAGATCTTCTTTTTCATCCATAACGTCAGAAGTATCTAAAAAAGTAGCTGATAATTTCGAGCCAATCAACATCGAGGGACAACAGGAGACCGGGGTGTGG ATCCATCACCCGGTAACTGAGGTGTCGCAGACTTGGGAGCCAAGAAAAGGGAAAACCCGGCAAGTCGAGTATGCTCAGAATGGGAAAGCATTAGGTGATT CATTTGGCAGCAGTATTTCGTCTGGAGTGCAATGCAATGACAGCAGCAGTACCGATGAAGCTACTGAGGGTAAAAAGCCAGGAAACAGACTCCGGCGTGG TCTACTCAAGATAACAGCAGCGTTACGTAAAGTTCCTAAAGATGGCAGTAATCCAGGCATCAGCGAGGAAACTGTTCAATCTCCTTCTGCCAACATTATA GGAGCGAGCAATGAAAAAGGAGGCAGGGTGAAGTTTGTCATAGAAGACAGCCTCTCCGGACGGATTATTGGCACGGATTCAAAACAACTAGAGTCCATTC CGGATTCAAATTCAGTTGGGAGCCCGGGAAGGGGAAATAAGAAAGAGAAAGCGAAATGCATCCTGAAACAGATGGAGAGGTCAGCTCGTAGCTTCAAGCA CATGCTGTCTAGGAAAGGATTCAGACAGTCTAGAGGCGATCCACAGTTAGGTCTGGAACTCGGAATGGATGCAGAGTTTGGCACTTCTGATGAAGAAGAA CAGCCTTATCGAAGGCCAATCATTGCCAATCCCATCGTATCGTGTTCCGGTAGTAATGATGATTCCAATAATGCAAAGGAGAACAGCACTGAAATTCGTG CCGTTGAAAGTTTGATGAAGAATGAACTCCAAAGAAAAGCGAATAATGGCAAGGAAGGCATAGAGAGTAAGGAGGTGGATACCTCGGAAGGACGTTGTAA GATGCTAGAAGAGGCTTGGCAGCGTAGTAAATAA
AA sequence Show only first row Show all	>Lus10026192 pacid=23156498 polypeptide=Lus10026192 locus=Lus10026192.g ID=Lus10026192.BGIv1.0 annot-version=v1.0 MDFGEISVMYHVGLVLFLLWLLSCFDLTHPIAFFLSLIYLYLLTIMAIEGRMMLFNPMYLELILAMYLELILVNSFGKVHERYLTKLRKKLQYERTKQAN RKRVLSDSETVRWLNHAVEKIWPICMEEITSQKILLPIIPWFMDKYKPWTAKKAVVQHLYMGRDPPMLTDMRVLRHCTGDDHLALEMGLKFCTADDMSAI LAVKLRKMLGFGMWTKLHITGMQVEGKVLVGIKFLRRWPFIGRLRVCFAEPPYFQMTVKPIFTHGVDVTVLPGIAGWLDKLLSMAFEQTLVRPNMLVADV EKLVFPCEENWFSVHEKKPIAFAKLEVIKASDMKPSDLNGLADPYVKGKLGPYGFRTKTQRKTLAPKWLEEFEIPVFTWESPNVLAIEVCDKDHFIDDSL GNCTVTINDLRDGERHDMWLPLQNIKSGRLHLAVTVREVKEDDAYPVEGENLNKQEVQESLANDTVNRSSFSSITSEVSKKVADNFEPINIEGQQETGVW IHHPVTEVSQTWEPRKGKTRQVEYAQNGKALGDSFGSSISSGVQCNDSSSTDEATEGKKPGNRLRRGLLKITAALRKVPKDGSNPGISEETVQSPSANII GASNEKGGRVKFVIEDSLSGRIIGTDSKQLESIPDSNSVGSPGRGNKKEKAKCILKQMERSARSFKHMLSRKGFRQSRGDPQLGLELGMDAEFGTSDEEE QPYRRPIIANPIVSCSGSNDDSNNAKENSTEIRAVESLMKNELQRKANNGKEGIESKEVDTSEGRCKMLEEAWQRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	2.6	0.8503
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	4.5	0.8241
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	6.2	0.7950
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	8.3	0.7895
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	9.2	0.8222
AT5G51170			unknown protein		Lus10035151 [exp]	10.0	0.8257
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	12.0	0.8206
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	12.2	0.8298
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	15.1	0.8269
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	19.1	0.7845

Compare expression of checked genes

Lus10026192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.