Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53560 82 / 2e-20 Ribosomal protein L18ae family (.1) AT1G17080 81 / 8e-20 Ribosomal protein L18ae family (.1) AT1G29970 78 / 8e-19 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G14595 58 / 2e-11 Ribosomal protein L18ae family (.1) AT5G57060 45 / 2e-06 unknown protein AT4G26060 42 / 1e-05 Ribosomal protein L18ae family (.1) AT1G54217 41 / 3e-05 Ribosomal protein L18ae family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042474 [exp] 215 / 7e-72 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1) Lus10013712 [exp] 79 / 5e-19 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10005580 [exp] 79 / 8e-19 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10005572 [exp] 71 / 1e-15 AT1G29970 88 / 4e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10013704 [exp] 69 / 3e-15 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10042485 [exp] 63 / 2e-13 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026180 [exp] 62 / 4e-12 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10028130 [exp] 61 / 8e-12 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3) Lus10005573 [exp] 42 / 8e-06 ND 47 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 74 / 2e-17 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1) Potri.001G198700 [exp] 47 / 2e-07 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1) Potri.003G044400 [exp] 44 / 2e-06 AT5G57060 103 / 3e-30 unknown protein Potri.006G146300 [exp] 40 / 0.0002 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 39 / 0.0003 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026193 pacid=23156508 polypeptide=Lus10026193 locus=Lus10026193.g ID=Lus10026193.BGIv1.0 annot-version=v1.0 ATGAACGGAGGAGCCAAGGGCAAAAGCGGAAATGGGATGGTAACGGACAACGGCCAGCAAAGTTTCCAAGGAGTCAGCATCGTTACTGAGGCGGCCTATC ATGCATCTTCCCTCCCTGCTTCCCAGTCCCCTTACAACGTTTATGCACCCAATCCTAATTCCCTTCCTGTTACTGCTCATGTTGTTGTTCAGCGAGGATC CTCAGATCTGCCTTGCTGTGGGATTGGTCTTGGTTGGTTCTTGTTTGTATTGGGATTCATATTGGGAGCGATTCCATGGTATGCTGGGGCATGTGTTCTT ATGTGTGCCAAGTATGACCGACGTGAGAAGGCTGGTTTGATTGCTTGCGCAATTGTTGCTGGTTTGGTGACGGCTCTCGTAGCCGTTCTCATCGTAATGT CCATCGTCGGAGTGAGTGCTGTTCATGTAGTTACTTAA
AA sequence Show only first row Show all	>Lus10026193 pacid=23156508 polypeptide=Lus10026193 locus=Lus10026193.g ID=Lus10026193.BGIv1.0 annot-version=v1.0 MNGGAKGKSGNGMVTDNGQQSFQGVSIVTEAAYHASSLPASQSPYNVYAPNPNSLPVTAHVVVQRGSSDLPCCGIGLGWFLFVLGFILGAIPWYAGACVL MCAKYDRREKAGLIACAIVAGLVTALVAVLIVMSIVGVSAVHVVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17080			Ribosomal protein L18ae family...		Lus10026193 [exp]	0	1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	7.9	0.6965
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	11.0	0.7119
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	26.8	0.7172
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	37.4	0.6981
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	43.6	0.6782
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	44.5	0.6870
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	45.4	0.6862
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	61.3	0.6863
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	69.0	0.6799
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	69.6	0.6848

Compare expression of checked genes

Lus10026193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.