Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56810 55 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 54 / 4e-09 F-box/RNI-like superfamily protein (.1) AT5G27750 53 / 1e-08 F-box/FBD-like domains containing protein (.1) AT2G39415 49 / 4e-08 F-box family protein (.1) AT3G26922 50 / 9e-08 F-box/RNI-like superfamily protein (.1) AT4G03220 50 / 9e-08 Protein with RNI-like/FBD-like domains (.1) AT5G56820 50 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22730 49 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G67390 49 / 2e-07 F-box family protein (.1) AT1G51370 49 / 3e-07 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040760 [exp] 75 / 2e-16 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 66 / 3e-14 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 68 / 8e-14 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 65 / 3e-13 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 65 / 6e-13 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10020636 [exp] 61 / 6e-13 AT5G56810 52 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10041818 [exp] 64 / 2e-12 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 63 / 3e-12 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10006342 [exp] 63 / 5e-12 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 62 / 7e-12 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 59 / 7e-11 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 59 / 8e-11 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 55 / 2e-09 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 48 / 6e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.015G011200 [exp] 47 / 9e-07 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024200 [exp] 45 / 5e-06 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G034500 [exp] 44 / 1e-05 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121400 [exp] 44 / 1e-05 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 44 / 1e-05 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026195 pacid=23156428 polypeptide=Lus10026195 locus=Lus10026195.g ID=Lus10026195.BGIv1.0 annot-version=v1.0 ATGGAAAAAGCTGTTAACGATATTGTCCCCTGCAATTGCCCAATTTCATCCCGTCGAGAGAGTTCTCTTTCTAGGGTTTTCAGAAACTCGAAACAAAGGA GGGAACGCAGCAAATGGTGGCCCTCAACTGCTTGTCTCCGTTCAGCATTGTTCCAGCCTCTTCTTGGTCATAAGCATGACAACAGTGTGAAGTTCAAAGC ACCCGCAACCCGGAAGCTTATGATGAAAGGGATCTGGGAGTTGAGTAGCGATAGGATTAGCCACCTTCCTGCTAAGGTGATAGAGCAGATTCTGGTACTT TTACCCTTAAAAGATGCAGCCAGAAAGAGTTTGCTCTCCACAAAATGGAAGCATCACTGGAGAAGAATTCCCCAGCTTGTATTTGATGAAGATTTCGCTA GGAGCCTTCTACTTGTAAAGCAATGCTTCCCCCCATCAACTCGTTTGTAA
AA sequence Show only first row Show all	>Lus10026195 pacid=23156428 polypeptide=Lus10026195 locus=Lus10026195.g ID=Lus10026195.BGIv1.0 annot-version=v1.0 MEKAVNDIVPCNCPISSRRESSLSRVFRNSKQRRERSKWWPSTACLRSALFQPLLGHKHDNSVKFKAPATRKLMMKGIWELSSDRISHLPAKVIEQILVL LPLKDAARKSLLSTKWKHHWRRIPQLVFDEDFARSLLLVKQCFPPSTRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020805 [exp]	3.2	0.8465
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	3.3	0.8727
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Lus10007856 [exp]	4.4	0.8151
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	5.8	0.8561
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	7.5	0.8482
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	8.7	0.8513
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	9.4	0.8392
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	9.5	0.8381
					Lus10007681 [exp]	12.2	0.7600
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	12.2	0.8224

Compare expression of checked genes

Lus10026195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.