Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) AT1G78380 314 / 5e-104 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17180 306 / 5e-101 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78360 297 / 3e-97 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17170 293 / 7e-96 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78370 289 / 3e-94 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 287 / 2e-93 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G53680 280 / 2e-90 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G17190 271 / 3e-87 ATGSTU26 glutathione S-transferase tau 26 (.1) AT1G78320 270 / 8e-87 ATGSTU23 glutathione S-transferase TAU 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042467 [exp] 723 / 0 AT1G17160 497 / 6e-177 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042468 [exp] 460 / 6e-161 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042469 [exp] 401 / 6e-138 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026198 [exp] 303 / 1e-99 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 302 / 5e-99 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 272 / 2e-87 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10030020 [exp] 268 / 5e-86 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 256 / 3e-81 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 253 / 4e-80 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114100 [exp] 543 / 0 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.001G436600 [exp] 353 / 4e-119 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 349 / 1e-117 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 344 / 1e-115 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 343 / 2e-115 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 343 / 3e-115 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 334 / 1e-111 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1) Potri.011G140400 [exp] 333 / 2e-111 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437100 [exp] 331 / 1e-110 AT1G78380 304 / 7e-106 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G431700 [exp] 327 / 4e-109 AT1G78380 307 / 4e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10026199 pacid=23156387 polypeptide=Lus10026199 locus=Lus10026199.g ID=Lus10026199.BGIv1.0 annot-version=v1.0 ATGAAAGGAATGACACTTCCGTCAGCTAACCGCCACCACCGTTGCTTCCCTAAACTCCCCAGAAACCCAACTGTCCAACCGATTCAAAAATGCTCAGTTT CAATTCAATCCATCACCAAGCATCATCAAGGATCGCTTCTTTTCCCCACTCTCGCCGTCAAATCCACCCATACCCCTCAATCTCTCCACGATTCATCGTC GCCGCCGCTGGTGGTCGTCGGATCCGCCAATGCCGACATCTACGTCGAGATCGACAGGCTCCCCAAAGAAGGAGAGACCATCTCGGCCATCAACGGCCAG ACTCTCGCCGGCGGGAAGGGCGCCAACCAGGCTGCCTGCGGTGGTAAACTTTCGTACCCGACTTACTTTGTCGGGCAGGTGGGCGAAGATGCCCACGGGA ATTTGATCACTGAAGCTCTTACGAAAGGAGGGGTGCGTCTAGATTATCTGAGGAACGTTGGGGGCGGCGATGTCCCAACTGGTCATGCTGTGGTGATGCT GCAGCCTGGTGGGCAGAACTCCATTATCATCGTTGGCGGAGCTAACATGAGTTGCTGGCCTGAGAAACTCAATGATGAGGATTTGCAAATCGTGAAGAAC GCTGGTATTGTTTTGCTTCAGAGAGAGATCCCTGACTCTGTCAACATTCAAGTTGCTCAGGCTGCGAAAGCTGCAGGTGTTCCTGTGATTTTAGATGCTG GTGGAGTCGATACACCTATTCCGGCTGAACTGCTCAAAGCTGTGGACATATTCAGCCCAAACGAAACTGAGCTTGCTCGAATCACAGGGATGTCAACTGA AAGCTTTGAACAAATTGGAGAGGCAGTCAAGAAGTGCTACAAAATGGGAGTTAAGCAAGTTCTGATGAAGCTTGGATCTAGAGGGTCTGCCTTATTTGTC GAAGGGGAAAAGCCAATCAAACAACCAATCATACCAGCCGCAAGAGTTCTAGACACTACAGGAGCTGGAGATACTTTTACTGCCTCTTTCGCCGTTGCAC TAGTCGAGGGTAACTCAAAAGAAGAATGCTTGAGATTTGCAGCTGCAGCTGCTTCTCTTTGTGTTCAAGTCAAGGGAGCCATTCCCAGTATGCCAGATCG GGCCTCTGTTGCTGATCTTCTTCAGGCTGTGTCATTGGATTTTGGAACTTTGCTGGGATCGGGGCTCGTAACTCATAAGGAGACCAAACGCAACACGCAA GAGAAGCTAACACAGGAGGCAACGATGGCCGACGCCGAGGTGATTCTGCTGGACACATGGGTGAGCCCGTTCGGTATGCGGGTGAGAATCGCCCTTGCGG AGAAAGGAATCAAACACGAGTACAGGGAAGAGGATCTGAGGAACAAGAGTGATCTCCTCCTGAAGATGAACCCCATCCACAAGAAGATCCCTGTTCTTAT CCACAACGGAAATCCCGTTTGCGAGTCCAACATCATTGTTCAGTATATTGATGAGGCTTGGAAGGATAAGGCTCCTTCGTTGCTTCCTTCTGATCCCTAC GACAGAGCTCAGGCCAGATTTTGGGCCGATTTCATCGATAAGAAGATATATGATGCTGGGAGGAAGGTATGGACAACGAAAGGGGAAGAGCAGAAAGCAG CGACAGAGGAGTTCATCAGCTACCTGAAAACACTGGAAGGAGAACTCGGGAAGAAGCCATACTTTGGGGGGGAGAAGCTTGGGTTTGTGGATGTAACAAT GATACCATTTTACTCATGGTTCCATGCTTACGAAGTGAGTGGAAACTTCAGCATCGAATCCCACTGCCCAAAGCTAGTGGAATGGGCCAAGAGGTGCATG CAGCACGATAGCGTGGGCAAGACGCTTCCCGACCCCAAGAAGGTGTATGAGTTTGTTCTGATGCTCAAAAAGAAGCTCGGGATCGAATGA
AA sequence Show only first row Show all	>Lus10026199 pacid=23156387 polypeptide=Lus10026199 locus=Lus10026199.g ID=Lus10026199.BGIv1.0 annot-version=v1.0 MKGMTLPSANRHHRCFPKLPRNPTVQPIQKCSVSIQSITKHHQGSLLFPTLAVKSTHTPQSLHDSSSPPLVVVGSANADIYVEIDRLPKEGETISAINGQ TLAGGKGANQAACGGKLSYPTYFVGQVGEDAHGNLITEALTKGGVRLDYLRNVGGGDVPTGHAVVMLQPGGQNSIIIVGGANMSCWPEKLNDEDLQIVKN AGIVLLQREIPDSVNIQVAQAAKAAGVPVILDAGGVDTPIPAELLKAVDIFSPNETELARITGMSTESFEQIGEAVKKCYKMGVKQVLMKLGSRGSALFV EGEKPIKQPIIPAARVLDTTGAGDTFTASFAVALVEGNSKEECLRFAAAAASLCVQVKGAIPSMPDRASVADLLQAVSLDFGTLLGSGLVTHKETKRNTQ EKLTQEATMADAEVILLDTWVSPFGMRVRIALAEKGIKHEYREEDLRNKSDLLLKMNPIHKKIPVLIHNGNPVCESNIIVQYIDEAWKDKAPSLLPSDPY DRAQARFWADFIDKKIYDAGRKVWTTKGEEQKAATEEFISYLKTLEGELGKKPYFGGEKLGFVDVTMIPFYSWFHAYEVSGNFSIESHCPKLVEWAKRCM QHDSVGKTLPDPKKVYEFVLMLKKKLGIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	0	1
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	2.0	0.8925
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	4.4	0.8987
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	7.1	0.8634
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	8.1	0.8627
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	9.5	0.8889
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	14.1	0.8704
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	14.4	0.8797
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	14.7	0.8681
AT3G47070			unknown protein		Lus10040689 [exp]	19.2	0.8648
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	19.9	0.8585

Compare expression of checked genes

Lus10026199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.