Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33400 637 / 0 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17900 58 / 2e-08 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT4G30480 54 / 9e-08 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G12400 50 / 6e-06 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G58620 49 / 9e-06 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G17880 48 / 2e-05 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT2G42580 48 / 2e-05 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT2G42810 47 / 4e-05 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G17970 47 / 7e-05 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G22670 46 / 7e-05 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042464 [exp] 856 / 0 AT1G33400 374 / 1e-121 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029712 [exp] 65 / 2e-10 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10031983 [exp] 53 / 1e-06 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10035117 [exp] 51 / 1e-06 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10036162 [exp] 52 / 2e-06 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10021502 [exp] 50 / 1e-05 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10031418 [exp] 49 / 1e-05 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028919 [exp] 48 / 3e-05 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10019379 [exp] 48 / 3e-05 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144200 [exp] 805 / 0 AT1G33400 700 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G178900 [exp] 62 / 3e-10 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 56 / 3e-08 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G173100 [exp] 55 / 1e-07 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.004G002900 [exp] 50 / 9e-06 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 49 / 2e-05 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G141800 [exp] 47 / 5e-05 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.013G008400 [exp] 47 / 5e-05 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G111500 [exp] 45 / 0.0002 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G119500 [exp] 45 / 0.0002 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026202 pacid=23156612 polypeptide=Lus10026202 locus=Lus10026202.g ID=Lus10026202.BGIv1.0 annot-version=v1.0 ATGGAGAAACTGAAATCCCTACTTCCAGATGACTTGAAGACAACTGTGGCTAACAGTACTCCTGACAATCTTCCTTCCACCTGCACTTCCCTTCTGGATT TCCTCCTCAATTTGCCTCAATTTCATCAAATGGTTAAGGATTTGGCAGCTCCACAGGCTTCCCTTTGTGCGAAAAACAAAGCCTCTGCTTTGGAGTTAAA GAAGAAGGGAAACCGATGCTTTTCCAATGGTGACTATGCAGCTGCTCTGAGTTGCTACTCTCAGGCTCTACGAGTTGCTCCTCAGGAGGCTCTTGATGAT GGAAAAAGTCTTCTTGCGGCACTGTATTTGAACAGAGCTTCTACCTTCCATAAACTAGACTTCCTAATGGAGTGTCTACGGGACTGTAATCGAGCACTTC AAATTTCAGCAAGCTATTCAAAGTTCATTTCTAGTGTCCAATGTCACCTGGACTCTTTTCCCCTCCTGTCTCATGAGCTTATGCTGCAGGCCTGGTACAG GCGGGGCAAAGCAAATGCAGCTTTGGGAAATCATCAAGAGGCAATCCTCGACTTGGATGTTGCTAAGAATATAGAGATCTCGTCAGCTGGAAAGAGACAG ATCGACGGTGAAGTAAGCATGATCATGAGCCAATGGAATTGTGCAAGCAGGATAGTGGATCAATGTAGTCAGAAAAGTATTAAAGCCGCAGGTGCTGAGT CTTGCCGATGTGGCATTTCATGTGTCACAGCACATGGTAAAGGAAGAGGGATAGCTGCACATTGTGATATTCCTGAATCATCTTTGGTTCACAAGGAAGA ACCCTATGCTCTGGTTATTCTGAAGAACTGTCGGGAAAGTCACTGCCACTACTGCTTAGGTGAACTACCACTGGATACAGTCCCTTGCCTCTCGTGTTCA ATTCCCTTGTACTGCTCCCAGCATTGTCAAGTCCAAGCAGGAGGAAAAAGTCCCGTAAGGTGCCAAGAGGAACAAAGAAATTATACTTACAGTGACAGTC TAGGAAAACATGTTATGGCGGTAACTTCATGCATTGATTCTGATACAGCTGTGGAGTGCTTCCCTGAGCATAAGCATGAATGTGGTGGTGTACACTGGCC CGCAGTCCTTCCGCCTGATGTTGTTTTGGCTGGCCGTATACTAGCGAAACATCTTTGTCAAAGTAACTTTGTGCTAAGACCTGACACGCTGATATCTCTG GGCTTATCTCACAACTATTCACTTATTGCTCAAGATGCCAAGTTGGAGGTTCACATATATGCTACTGTGTTGATGTGCTGTCTTCAGAATGCTATTGGCT TTGAACTTCCAGTCAATGCTATTTATTTGTCCCAGATCATCATACTTCTATCACAAATAAGGGTGAATGCAATGGCCATTGTTCGGGTGAAATCTGATGC TCATGGGGGCCTTGCCTTTACTAGTAATATGGAACAGGTCCCAGTGGGTCAAGCAATCTATATAACTGGAAGTATGTTCAATCATTCTTGCCAGCCGAAT GTTAATGCATATTTCCTGTCACGTACTCTTTTTGTGCGGACAACAGAGTTTGTCCAGATTGGGTGTCCTTTGGAGTTGTCCTACGGTCCACAGGTTGGGC AATGGGACTGTAAAGATCGCCTTCAAATTTTAGAAGATAAGTACTCATTCCTATGTCAGTGCAGCAGCTGCTCAGAACTAAATGTACCTGATCTAGTTCT AAATGCTTTCCAATGTACCAATCCAAATTGCTCTGGAGTTGTCTTGGATAAAATAGTGACAAAGCGTGAAATGGATAAGCTGAATGACTCGCACAAAAGA TTGCAGTTGAATGGTGATTCAGTGGTGAAGAGGACTGACATCAAGAATTTAGTACGTTTTAATATCCAGCCACACAGTAGCTCTGGGCCTGTTGAACCTG GATACTGTTTGAAGTGTGGTTGTCTGTGTCATCTTGTTGCTGCACGTGAGGCCATGGACAATGCATGGAATCATATACATAGGCTGGAAGATGCATTAGC ATCAAAAGAAATTTCAAGTACCATACTCTCAGATGCTTCAAGGGCTCTTGACCTTTTACGATCAGTGTTGCATCCTTATAACAAACGCATTGCTGAGGCT GAAGATAAAATAGCACAAGCATTTTGTTTGGCAGGAGACTTGCGATCTTCGGAGAGCTTATGTAAATCGTCAATTGCAATACTGGAAGTGCTTTATGGTG GGGATCATATAGTAATCGGATATGAACTAATCAAGCTTGCTAGCATCCAACTGTCCATGAATGACCCTCGAGTTGGGGATACCAGGAGAAGACTAGAGCC AATATTTCACCGCTACTTTGGAAGTCATGCAAACTTGGTGTTCCCTTTTCTGAATGCCTTGAGGAAACAACCTGTAGTAAGCAGTTGA
AA sequence Show only first row Show all	>Lus10026202 pacid=23156612 polypeptide=Lus10026202 locus=Lus10026202.g ID=Lus10026202.BGIv1.0 annot-version=v1.0 MEKLKSLLPDDLKTTVANSTPDNLPSTCTSLLDFLLNLPQFHQMVKDLAAPQASLCAKNKASALELKKKGNRCFSNGDYAAALSCYSQALRVAPQEALDD GKSLLAALYLNRASTFHKLDFLMECLRDCNRALQISASYSKFISSVQCHLDSFPLLSHELMLQAWYRRGKANAALGNHQEAILDLDVAKNIEISSAGKRQ IDGEVSMIMSQWNCASRIVDQCSQKSIKAAGAESCRCGISCVTAHGKGRGIAAHCDIPESSLVHKEEPYALVILKNCRESHCHYCLGELPLDTVPCLSCS IPLYCSQHCQVQAGGKSPVRCQEEQRNYTYSDSLGKHVMAVTSCIDSDTAVECFPEHKHECGGVHWPAVLPPDVVLAGRILAKHLCQSNFVLRPDTLISL GLSHNYSLIAQDAKLEVHIYATVLMCCLQNAIGFELPVNAIYLSQIIILLSQIRVNAMAIVRVKSDAHGGLAFTSNMEQVPVGQAIYITGSMFNHSCQPN VNAYFLSRTLFVRTTEFVQIGCPLELSYGPQVGQWDCKDRLQILEDKYSFLCQCSSCSELNVPDLVLNAFQCTNPNCSGVVLDKIVTKREMDKLNDSHKR LQLNGDSVVKRTDIKNLVRFNIQPHSSSGPVEPGYCLKCGCLCHLVAAREAMDNAWNHIHRLEDALASKEISSTILSDASRALDLLRSVLHPYNKRIAEA EDKIAQAFCLAGDLRSSESLCKSSIAILEVLYGGDHIVIGYELIKLASIQLSMNDPRVGDTRRRLEPIFHRYFGSHANLVFPFLNALRKQPVVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	1.0	0.9048
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	2.2	0.8519
AT3G25840			Protein kinase superfamily pro...		Lus10035032 [exp]	3.5	0.8838
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	3.5	0.8709
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	4.7	0.8395
AT1G47570			RING/U-box superfamily protein...		Lus10033472 [exp]	6.0	0.8628
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	6.0	0.8401
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	6.5	0.8271
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	8.5	0.8388
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	8.8	0.8425

Compare expression of checked genes

Lus10026202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.