Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31500 459 / 1e-162 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 191 / 1e-58 DNAse I-like superfamily protein (.1) AT3G58560 112 / 7e-27 DNAse I-like superfamily protein (.1) AT3G58580 110 / 1e-26 DNAse I-like superfamily protein (.1) AT5G11350 102 / 2e-23 DNAse I-like superfamily protein (.1) AT1G73875 99 / 7e-23 DNAse I-like superfamily protein (.1) AT3G18500 95 / 3e-21 DNAse I-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042463 [exp] 300 / 6e-101 AT1G31500 206 / 3e-64 DNAse I-like superfamily protein (.1.2.3.4) Lus10000005 [exp] 155 / 3e-47 AT1G31500 118 / 5e-34 DNAse I-like superfamily protein (.1.2.3.4) Lus10000006 [exp] 147 / 6e-44 AT1G31500 122 / 1e-35 DNAse I-like superfamily protein (.1.2.3.4) Lus10029338 [exp] 117 / 1e-28 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 116 / 2e-28 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10014775 [exp] 110 / 9e-27 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10012293 [exp] 110 / 2e-26 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 109 / 3e-26 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10015981 [exp] 109 / 5e-26 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106000 [exp] 521 / 0 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.016G061700 [exp] 120 / 5e-30 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 115 / 4e-28 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 104 / 3e-24 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 93 / 1e-20 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10026203 pacid=23156479 polypeptide=Lus10026203 locus=Lus10026203.g ID=Lus10026203.BGIv1.0 annot-version=v1.0 ATGAGCACTACGCCAATGCCAATATGCCCAAAATTTATTACGGTTGAAGGTGGTGAAATTTGTTCTAGAAGCAAGCCTGATGGCTTAAGATTTAGTGTTG TCTCTTACAATATCTTGGCTCAGGCGTACGTGAAGAGTTCTCTGTTTCCACATTCTCCACCTGCTTGCTTGAAGTGGAAGGCTCGTTGTCAGTCAATTTT AACTGTTCTGAAAACCGTAGAAGTTGACTTCCTCTGCTTGCAGGAAGTGGATGAATATGATAGCTTTTACAAGCCGAACATGGTAAACCATGGTTATTCT AGCATTTATATTCAAAGGACTGGGCAGAAGCGGGACGGTTGTGGAATCTTTTATAAACTCAACAGTGCGGAGTTGCTCTTAGAGGAGAGATTAGAGTACA ATGATCTTATAAATGCACTTGGAGATGAAGACAATAAACAGAGCAGTCCACTTGGTAACAATAGTGACAGCGTTTCACTACCAAATACTACTCGGGAAGA TCGAGGTGATCCTAATGACCCCCGGGTGAGATTGAAGCGGGATTGTGTTGGCATTATGGCTGCTTTTAAACTCAAAGGTCCCTTCTACAACACTGTTATA GTGGCAAATACACATCTTTACTGGGATCCAGAGTGGGCAGATGTGAAGCTTGCACAGGCAAGGTATCTTCTTTCCCGGCTGGCGAAGTTTAAGATGCTGG TTTCTGAAATGTTTGAATGTGAACCTTCAGTAGTCCTGACTGGTGACTTCAATTCAACCCCTGGAGACAAGGTTTACCAATACCTTGTTTCTGGCGATGC TTTGGATTCCACACCTTCGGCGGAATGTGTGGATGAGCTGCCAATTCCTTTGCGCAGTATCTATGCATCAACCAGGGGAGAACCTCCATTTACAAACTGC ACTCCGGATTTTACTAATACACTTGATTACATATTCTTTTCTCCTGGCGACCAGTTGAAACCGGTCGGCTTCCTTGAGCTTCCGGAAGCAGAGGATGTTG ATGTTGCTGGGGGATTACCGAATCATTACCACCCAAGTGACCACCTTCCGATAGGTGCACAATTCGAGATTAGCAGTGCATAA
AA sequence Show only first row Show all	>Lus10026203 pacid=23156479 polypeptide=Lus10026203 locus=Lus10026203.g ID=Lus10026203.BGIv1.0 annot-version=v1.0 MSTTPMPICPKFITVEGGEICSRSKPDGLRFSVVSYNILAQAYVKSSLFPHSPPACLKWKARCQSILTVLKTVEVDFLCLQEVDEYDSFYKPNMVNHGYS SIYIQRTGQKRDGCGIFYKLNSAELLLEERLEYNDLINALGDEDNKQSSPLGNNSDSVSLPNTTREDRGDPNDPRVRLKRDCVGIMAAFKLKGPFYNTVI VANTHLYWDPEWADVKLAQARYLLSRLAKFKMLVSEMFECEPSVVLTGDFNSTPGDKVYQYLVSGDALDSTPSAECVDELPIPLRSIYASTRGEPPFTNC TPDFTNTLDYIFFSPGDQLKPVGFLELPEAEDVDVAGGLPNHYHPSDHLPIGAQFEISSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31500			DNAse I-like superfamily prote...		Lus10026203 [exp]	0	1
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	8.7	0.8681
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006186 [exp]	12.4	0.8066
AT2G20362			unknown protein		Lus10024963 [exp]	14.0	0.8544
					Lus10035810 [exp]	14.8	0.8360
AT1G28540			unknown protein		Lus10024553 [exp]	16.1	0.8234
					Lus10035158 [exp]	16.9	0.8439
AT3G48200			unknown protein		Lus10008827 [exp]	18.7	0.8195
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	19.6	0.8277
AT3G44716			unknown protein		Lus10009406 [exp]	19.8	0.7829
					Lus10003893 [exp]	23.0	0.8405

Compare expression of checked genes

Lus10026203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.