Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79040 162 / 2e-52 PSBR photosystem II subunit R (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042461 [exp] 238 / 2e-82 AT1G79040 190 / 3e-63 photosystem II subunit R (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142200 [exp] 186 / 7e-62 AT1G79040 180 / 2e-59 photosystem II subunit R (.1) Potri.001G438700 [exp] 184 / 6e-61 AT1G79040 181 / 5e-60 photosystem II subunit R (.1) Potri.001G438800 [exp] 149 / 2e-47 AT1G79040 178 / 9e-59 photosystem II subunit R (.1) Potri.011G142300 [exp] 132 / 2e-40 AT1G79040 141 / 3e-44 photosystem II subunit R (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04725 [flax] [poplar] PsbR Photosystem II 10 kDa polypeptide PsbR
Representative CDS sequence Show only first row Show all	>Lus10026205 pacid=23156408 polypeptide=Lus10026205 locus=Lus10026205.g ID=Lus10026205.BGIv1.0 annot-version=v1.0 ATGGCATCTATGGTGGCTTCATCATTGACATTGAAACCAACTTCCTCTTTCCTTGAGAAAGCTGCTTCCAGACCAGTTTATGGAATTCCTAGCCTTCGAA GAAAGTCCTTCAAGGTTGTGGCCAGCGGTGTCAAGAAGATCAAAACTGACACTCCCTATGGAACTGGTGGTGGGATGAACCTGAGGAACGGCGTTGATGC TTCTGGCAGGAAGCCAACGGGAAAGGGAGTATACCAGTACGTGGACAAGTATGGTGCCAATGTGGATGGATACAGTCCTATCTACAACGCTGATGAATGG GCTCCAACTGGCGATACCTACGCCGGAGGACTCACTGGGTTGGCAATATGGGCAGTGACATTGGTTGGGATCCTAGCAGGAGGAGCTCTCCTTGTCTACA ACACCAGTGCTTTGTCTCAGTAA
AA sequence Show only first row Show all	>Lus10026205 pacid=23156408 polypeptide=Lus10026205 locus=Lus10026205.g ID=Lus10026205.BGIv1.0 annot-version=v1.0 MASMVASSLTLKPTSSFLEKAASRPVYGIPSLRRKSFKVVASGVKKIKTDTPYGTGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNADEW APTGDTYAGGLTGLAIWAVTLVGILAGGALLVYNTSALSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	0	1
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	1.0	0.9893
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10002673 [exp]	2.4	0.9765
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10018385 [exp]	3.5	0.9774
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	3.5	0.9738
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	6.3	0.9566
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	6.7	0.9584
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	7.1	0.9735
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	7.1	0.9674
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	7.3	0.9687
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	7.3	0.9726

Compare expression of checked genes

Lus10026205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.