Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14770 718 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 365 / 4e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 321 / 4e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 308 / 4e-88 PGR3 proton gradient regulation 3 (.1) AT5G65560 298 / 9e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 299 / 2e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 282 / 2e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 275 / 2e-78 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G06920 275 / 4e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19290 276 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037968 [exp] 335 / 2e-97 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 327 / 2e-95 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 310 / 3e-90 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 305 / 3e-88 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 307 / 4e-88 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10010410 [exp] 302 / 4e-87 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 300 / 4e-87 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 290 / 6e-83 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 276 / 3e-78 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043101 [exp] 1256 / 0 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 365 / 4e-108 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 338 / 9e-100 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 336 / 6e-98 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 332 / 8e-97 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 308 / 1e-89 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 295 / 9e-87 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 297 / 2e-85 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G249800 [exp] 291 / 6e-84 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G025600 [exp] 281 / 8e-82 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026206 pacid=23156512 polypeptide=Lus10026206 locus=Lus10026206.g ID=Lus10026206.BGIv1.0 annot-version=v1.0 ATGGCGCTAGGATTATTGGCTTCCAGGAAGCTGACAAAGCTCCAACCCAACTCTCCCAACGTCTTTCTTCTTAGCTCAATTGCTGCGGCCAATGAGGAGC TCGTCAGGTCATTGGTAACTAGTAAAACATCACCTCCAACTATGGAGAGGACGGTTATGACGAGCTCCGGTCAGTGTTCGAAGAGCCACCTTCATGCCTC GTTCTTCTGCACTCTCATACATCTCTACTTATCTTGCGGCAGACTGTCCAGAGCTACCGAGGCTTTCTACGACATGAGAAGTCGAGGCATTGTTCCTGTT TTGCCTCAATGGAAACGACTTATTTACCGGTTCAATGTCTCCGGATTGGTCGCTCAGGTACAAGATGTTTACAATGAAATGTTGATTTGTGGGGTTTTCC CTGACCTTTTTATTCACAATGTACTGGTACATGCCTGGTGTAAAATGGGTAGTTTGAAGTTGGCTTTAGATACGCTCAGAGATTTTGACATTGAGATTGA TGTTGTTACGTATAATACCGTTATCTGGGGATTTTGCAAGCAACGTCTGGTGCATCAAGCGTTCGGTCTTTTGTCAGTTATGTTGAAGAGGGATGTGGAA TTTGATTCTTTTACTTGTAATACATTGGTTAAAGGGTTTTGCTCGGATGGGATGATTACGTATGGAGAGTGGGTTATGTATCAGTTGACCGATGGAGGGG TTTATAAAGATGTTGTAGGTTATAATACATTGATTGATGGGTATTGCAAAGTTGGAAACTTTGGTTATGCTTGTGAATTGAGGGAGAAGATGGAAAAAGA TGGCGTCTCGCCAGACATTGTTACATACAATACATTGATTACTGGATTTTGCAAAGAAGGTGAATTTGAGAAAGCAAAGGGTTTAGTTGCCGAAATCTTA AAGTCCAGAAGAGATGCAGATGGCGGTTCTATCGTAATGGATGATAGAACTGTCGAGGAAGAAAGTCCTGTCTTGGAACCAAACTGTATCACGTACACTA CATTAATAAGTGCCTACTGTAAGGAAAATGGGCTTGAGGAGGCATTGACGTTATATAAGGAAATGGTTGTAAATGGTTTCTTTCCTGATGTGGTTACCTA TTCTTCTATTCTCAATGGTCTTTGTAAGTGTGGAAGGTTATCTGAAGCAAAAGCAATATTGAAGGAGATGGAGGAAATGCATGTGGATCCCAATCATGTT GCATATACTAATCTCATTGATTCATTGTTCAAAACTGGTAGTGCTTGGGAAGCATTTGTGTTTCAAAATCAGATGATAGTCCGTGGGATTACCTTCGACT TGGTTTTGTGCACTGCACTTATGGATGGGCTTTTCAAGTCTGGTCAGCCCAGAGAAGCTGAAGAGATGTTCCACATACTTTCGGAGCTTAATCTTATTCC AAACAACATTGCCTATACCGTATTGATTGATGGTCGTTGCAAGTTAGGAGACATGAAAGGTGGAGAGTCTCTACTGAAAGAAATGCATAAGAAGCTTGCC AAACCGACTGTAGTGACTTATGCTTCTATTATAAATGGATATGCAAGAAAAGGCATGCTGGATGAAGCTGTTAATGTGATGAAGAGAATGCTGGAGCAAA ATATTGCTCCAAATGCTTACATATATGCTATACTAATTCGTGGTTTCTTCAAGGATGGTAGATCCGAACTTGCCTCTGAACTTTACGAGGAAGTTAGACG GAGTGGACTACAATTGAACAATTTCATATTGGATGCTTTGGTAAATAGTTCCAAAAGAGGGGGGAAAATGGAGGCAGCTGAAGGCTTATTCAAAGAGATG AATTCCGGGGGACTATTACTTGATTGTATTAACTACACATCCTTGATGGATGGTCTGTTCAAGGCAGGAAATGAATCAGGTGCTCTAGCAATTGCTGAAG AAATGAGGCAGAAAGGGGTAAAGTTTGACGTTGTTGCTTATAATGTATTAATGAACGGGCTGTTGAGGGTTGGTAAATATGATGCCAAATCTGTATACGA TGGAATGGAAATGTTAGGTCTTGTTCCAGATCTTACCACGTATAATACCATGATCAATGCATACTGCAAGCAAGGAAAACTGGAAGAAGCCTTCAAAATT TGGAATGAAATGTTGAGTTTTGGAATCCTGCCAAATTGCATCACTTGTAACATCTTTGTACAAGGGCTTTCTGAAGCCGGTCAAATTGAAAAGGCAATTG ATATTTTGGAATCTATGAGGGTTATGGGCATACAACCCAACCAAATTACTCATAGAGTTTTGCTTGGTGCATCAGCAAAAAGCAAAAATGCTGACGAAAT CTTTCAGATGCATCAGCAACTTGTTAGCAAGGGACTTGAGGTGAATCAAGAAGTTTACAACAATCTCATTATAGCTTTCTGCAGGCTAGGTATGACAAGA AGAGCAACCTGGGTTTTGAGAACTATGACTAATGATGGTTTTGAGGCGGATACTATTACTTATAATGCTCTTATTCGTGGTTTTTCTGAAGCCAGTCATA TTCACTCTGCTTATGCAACATACAAGGAGATGTCAAACAAAGGAATTTTTCCAAATATGATAACTTACAACATCCTTTTAGGGGGTTTACTAGCTGCTTC TTTGATGGAAGATGTGCAGAAAGTATTGAATCAAATGAAGGAAAATGGCTTAGCTCCTGATGCATCTACATATGATACTTTGATAACTGGCCATGCCAAG ATTGGAAATAAGAAGGAGGCCATAACAAGTTATTGTGCAATGATTGCAAAAGGTTTTGTCCCTAGAACAAGCACCTACAATGTGCTTATTGCAGCATTCT CCAAACAAGGAATGATGGACCAGGCTAGGGAGTTGCTGGATGAAATGCAGCGCCGGAAGGTCCTTCCGAATTCTCCCACTTACAACTTACTAATTTGTGG GTACTGCAATTCATCTAGGCAACCGAAGTTGCCTAAGACATTAAGAAAGACATACCAAACTGAGGCAAAAAGATTAGTCAGTGAGATGAATGAGAAAGAG TTTGTCCCTTGGGAGAGAACTCTTTCCTGCATCAGCAATCAGCCTCGTCGATTCCCGCTGGGTGCACAACCGGAGATTATGAGAGCCGCTGAGAAGGACG GCCAGTACGCTTCCTTCCTCTATGATGCCTGCCGTGACGCTGTCCATCATCTCTTTGGTGCTGGCCAAAAAACGCTTGGGGAAGAGTATTGCGACATTAT ACAGGTTGGATGTAGTTCTGGGCTGGATGTTCTGGTGGAACGGGGTATTGTATTTCACCTTCATTCTTCTCCTGCACTTGTTTCTATTTCATTTATGGAG GCGTTTCTCTCAGGTTTCAGGGCCTTATGGACTTCCCCCAACCCCAGCAAAGAGGGCTCTTGCCGTTTTGTATCCGACAGCTATTCCTTATCTGACTGA
AA sequence Show only first row Show all	>Lus10026206 pacid=23156512 polypeptide=Lus10026206 locus=Lus10026206.g ID=Lus10026206.BGIv1.0 annot-version=v1.0 MALGLLASRKLTKLQPNSPNVFLLSSIAAANEELVRSLVTSKTSPPTMERTVMTSSGQCSKSHLHASFFCTLIHLYLSCGRLSRATEAFYDMRSRGIVPV LPQWKRLIYRFNVSGLVAQVQDVYNEMLICGVFPDLFIHNVLVHAWCKMGSLKLALDTLRDFDIEIDVVTYNTVIWGFCKQRLVHQAFGLLSVMLKRDVE FDSFTCNTLVKGFCSDGMITYGEWVMYQLTDGGVYKDVVGYNTLIDGYCKVGNFGYACELREKMEKDGVSPDIVTYNTLITGFCKEGEFEKAKGLVAEIL KSRRDADGGSIVMDDRTVEEESPVLEPNCITYTTLISAYCKENGLEEALTLYKEMVVNGFFPDVVTYSSILNGLCKCGRLSEAKAILKEMEEMHVDPNHV AYTNLIDSLFKTGSAWEAFVFQNQMIVRGITFDLVLCTALMDGLFKSGQPREAEEMFHILSELNLIPNNIAYTVLIDGRCKLGDMKGGESLLKEMHKKLA KPTVVTYASIINGYARKGMLDEAVNVMKRMLEQNIAPNAYIYAILIRGFFKDGRSELASELYEEVRRSGLQLNNFILDALVNSSKRGGKMEAAEGLFKEM NSGGLLLDCINYTSLMDGLFKAGNESGALAIAEEMRQKGVKFDVVAYNVLMNGLLRVGKYDAKSVYDGMEMLGLVPDLTTYNTMINAYCKQGKLEEAFKI WNEMLSFGILPNCITCNIFVQGLSEAGQIEKAIDILESMRVMGIQPNQITHRVLLGASAKSKNADEIFQMHQQLVSKGLEVNQEVYNNLIIAFCRLGMTR RATWVLRTMTNDGFEADTITYNALIRGFSEASHIHSAYATYKEMSNKGIFPNMITYNILLGGLLAASLMEDVQKVLNQMKENGLAPDASTYDTLITGHAK IGNKKEAITSYCAMIAKGFVPRTSTYNVLIAAFSKQGMMDQARELLDEMQRRKVLPNSPTYNLLICGYCNSSRQPKLPKTLRKTYQTEAKRLVSEMNEKE FVPWERTLSCISNQPRRFPLGAQPEIMRAAEKDGQYASFLYDACRDAVHHLFGAGQKTLGEEYCDIIQVGCSSGLDVLVERGIVFHLHSSPALVSISFME AFLSGFRALWTSPNPSKEGSCRFVSDSYSLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	2.0	0.8891
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	3.5	0.8877
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	4.2	0.8833
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	5.4	0.8553
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	6.3	0.8706
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	6.9	0.8655
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	7.5	0.8663
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	8.0	0.8789
					Lus10012794 [exp]	9.0	0.8783
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	9.2	0.8836

Compare expression of checked genes

Lus10026206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.