Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 530 / 0 Protein kinase superfamily protein (.1) AT3G09010 351 / 4e-119 Protein kinase superfamily protein (.1) AT1G56130 367 / 6e-118 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 366 / 1e-117 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 360 / 2e-115 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 354 / 3e-113 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 349 / 2e-111 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 346 / 2e-110 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 346 / 6e-110 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 340 / 6e-108 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042460 [exp] 672 / 0 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 426 / 1e-148 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 422 / 2e-146 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 370 / 1e-126 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 368 / 5e-126 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10031199 [exp] 381 / 2e-123 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10011193 [exp] 355 / 9e-121 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 352 / 2e-118 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10004825 [exp] 347 / 2e-117 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142100 [exp] 578 / 0 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 568 / 0 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 490 / 1e-173 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 486 / 6e-171 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 404 / 3e-140 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 379 / 3e-130 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 371 / 4e-127 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 367 / 3e-125 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 370 / 3e-119 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G114800 [exp] 349 / 2e-118 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026207 pacid=23156618 polypeptide=Lus10026207 locus=Lus10026207.g ID=Lus10026207.BGIv1.0 annot-version=v1.0 ATGCCTTGCTTTTCCTTCTTGTTTGGTGGAAAGATTCATTCTTCACGACGACATGTTGCCGGTGAAGATGAAGAACTTGCTGGTGTTCACAATGTCAAAA CGTATTCCTACAAGGAATTGAGACAAGCTACTGATGATTTCAGTACCGCAAACAAAATTGGAGAGGGTGGTTTTGGCTCTGTCTACAAGGGACGTCTTAA AGATGGTAGACTAGTTGCTGTAAAACCTCTTTCGGCTGAATCAAGACAAGGGGTAGGCGAGTTCCTAGCTGAGATAAAAGCGATCTCAGAGATCGAACAT GAGAATTTGGTTAAGCTTTATGGCTGTTGCGTGGAAGGAAACCACACAATTCTGGTCTACAATTACCTGGAGAATAATAGCTTGGCCCAGACGCTTCTTG GTGGATCTCACAGTACTATTCAGTTTGATTGGAAAACACGTACGAGAATAAGCATCGGAGTAGCGCGAGGGCTTGCCTTCCTTCACGAAGAAGTACGACC GTACATTGTGCATAGAGATATCAAGGCAAGCAACATTCTCTTGGACAAAGATCTAACACCAAAGATTTCTGATTTTGGTCTGGCAAAGTTGATCCCATCA CACATGACTCATGTTAGTACTCGGGTGGCCGGGACAATAGGGTATCTTGCACCAGAGTATGCAATTCGGGGACAGTTGACGCGAAGAGCAGACATATACA GTTTTGGCGTCCTGCTTGTGGAAATTGTCAGCGGAAGATGCAATACAAACACTCGATTGCCCGTTGAGGAGCAATACATCCTAGAACGGACATGGCAACT TTACGAACGCAAGGAGCTCATAGCGCTGGTAGACACATCGCTGGAGGGCGAATTTGATCCGGAGGAGGCTTGTAGGTATTTGAAGATTGGCCTACTCTGC ACCCAAGACTCTCCAAAGCTTCGCCCGTCTATGTCAACAGTGGTAAAGATGCTGAGTGGTGAGAAGGAGGTTGATGACACTATGATAACGAAGCCAGGTC TGATCTCCGACTTCATGGACCTAAAGGTGCGTACTCAACCTGCTCCTAAAACCAGACGGGAATCGGCTGCAATAAAAAAGTCTTCCGAAGCAAAGACTTC ATCATCATCATCGTCGTACGCTGATCATTCTTCCTCTTCCTCCGGCACATCAACAAATGTAACCACAACAACAACGTCAACGACCTTTACTGCGTCATAT TGA
AA sequence Show only first row Show all	>Lus10026207 pacid=23156618 polypeptide=Lus10026207 locus=Lus10026207.g ID=Lus10026207.BGIv1.0 annot-version=v1.0 MPCFSFLFGGKIHSSRRHVAGEDEELAGVHNVKTYSYKELRQATDDFSTANKIGEGGFGSVYKGRLKDGRLVAVKPLSAESRQGVGEFLAEIKAISEIEH ENLVKLYGCCVEGNHTILVYNYLENNSLAQTLLGGSHSTIQFDWKTRTRISIGVARGLAFLHEEVRPYIVHRDIKASNILLDKDLTPKISDFGLAKLIPS HMTHVSTRVAGTIGYLAPEYAIRGQLTRRADIYSFGVLLVEIVSGRCNTNTRLPVEEQYILERTWQLYERKELIALVDTSLEGEFDPEEACRYLKIGLLC TQDSPKLRPSMSTVVKMLSGEKEVDDTMITKPGLISDFMDLKVRTQPAPKTRRESAAIKKSSEAKTSSSSSSYADHSSSSSGTSTNVTTTTTSTTFTASY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	0	1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	2.4	0.9149
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	3.5	0.9101
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	4.2	0.9137
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	6.2	0.9177
AT3G25610			ATPase E1-E2 type family prote...		Lus10019152 [exp]	6.3	0.8989
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10029605 [exp]	9.5	0.9100
AT2G18680			unknown protein		Lus10015508 [exp]	9.8	0.8541
					Lus10023874 [exp]	11.6	0.8876
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10031347 [exp]	14.9	0.8233
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	15.4	0.8479

Compare expression of checked genes

Lus10026207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.