Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80080 458 / 1e-158 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT2G42800 189 / 1e-54 AtRLP29 receptor like protein 29 (.1) AT4G28560 185 / 2e-53 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT3G25670 173 / 1e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 159 / 5e-44 RNI-like superfamily protein (.1) AT1G13230 159 / 9e-44 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 130 / 2e-32 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G20140 128 / 1e-31 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G56370 128 / 1e-31 Leucine-rich repeat protein kinase family protein (.1) AT1G73066 125 / 6e-31 Leucine-rich repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042458 [exp] 647 / 0 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10010946 [exp] 198 / 2e-58 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10031383 [exp] 195 / 4e-56 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10034261 [exp] 166 / 3e-46 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 159 / 4e-44 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 156 / 3e-42 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10038948 [exp] 152 / 2e-41 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10027239 [exp] 152 / 3e-41 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10002293 [exp] 135 / 1e-33 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202100 [exp] 517 / 0 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G211800 [exp] 184 / 6e-53 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.008G114700 [exp] 179 / 5e-51 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.005G227600 [exp] 150 / 3e-40 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.012G124100 [exp] 129 / 8e-32 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G132200 [exp] 128 / 1e-31 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.002G008375 [exp] 128 / 1e-31 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 126 / 6e-31 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.012G027600 [exp] 126 / 6e-31 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.019G120733 [exp] 124 / 3e-30 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10026208 pacid=23156521 polypeptide=Lus10026208 locus=Lus10026208.g ID=Lus10026208.BGIv1.0 annot-version=v1.0 ATGGCTCAACAATTCTCCACCCTTTTCCCTCTCCTTCTTCTTACTCTTTCTTTCCCCTTCACGTCGTCTTTCACAATCATCGTCTCCGACTCCTCCAACA ACCAGTCCGACGCCACAACCGACCGCGTCCAGTTCTCCTCCGACACCAACCGTGCTCGAACCGAACCGAACGAGCAGGAAGCGGTCTACGACATCATGAA AGCAACCGGCAACGACTGGGCGACCGACATCCCCGACGTCTGCCGCGGAAGGTGGCACGGCATCGAGTGCGTCCTCGATAAGGACAACGTCTTCCACGTC ATCTCCTTATCTTTCGGAGCATTGTCGGACGAAACAGCTTTCCCAACTTGCGAACCAACCACCAACTCCACCATTTCCCCTTCCGTCACCAAACTCCCCC ATCTCCGGACCCTCTTCTTCTACCGTTGCCTGACCCACAACCCGCAACCCGTGCCCCGGTTTCTGGCCCGATTGGCTCCCACTTTGCAAACTTTAATCCT CCGAGAAAACGGCCACGTGGGTCCCATCCCTGACGAGCTGGGGAGTCTCGGCCGGCTCAGGGTGCTTGATCTCCACAGGAATAATCTCAACGGTTCGATA CCGGGCGGGTTGGGTCGGTTGGGCGGGTTGAAGTCGTTGGACCTGAGTGGGAATAAATTAATCGGTTCGATACCCAGCGTTAGATTTTCGTCGTTGAATG TGCTGGACTTGAGTCAAAATTTGCTCAAGGGTTCGATCCCGCCGAGCATTTGCTCCAGCCGCCGTCTGATCAAACTGGATATCAGCCGAAATCAACTAAC CGGAATGATTCCGAAAGCGATCGGTGGATTGAAGGAGCTCATCGTCATGGATTTGAGCTACAACCGCATGTCCGGGCCGCTTCCGGCGACCGTCAGATGG TTAACATCTCTCCAAGCGTTGATTCTCAAGGGGAATCCACTTTGGTCTGCCGGTATTTCAAGCAATCAATTTGAAGGGATGAAAATGCTTGAAGTACTAG TGATGTCGAACATGAACCTGACCGGTTCGATCCCGGAGTCGCTGGGTGGGTTGAGAAACCTGCGAGTGGTTCACCTTGAGGGGAACAAACTCAAGGGCCC AATCCCGAATAGTATGGGAGAGTTGAAGAATGTGTCGGAGTTGAGGCTAAACGACAACGAACTGACGGGAGCGGTGCCGTTTGGTAAGGAGATGGTTTGG AGGATGAGAAGGAAACTGAGGCTTCACAACAACGTGGGGCTTTGCTATGAAGGTGGCAGTGGGTTAGGCGAAGAAGCTGGTGGCCCCGCTTCAGCTTCTT TCTTAGATTTGGGAATTGGCTTGTGCTACCATAACAGATGA
AA sequence Show only first row Show all	>Lus10026208 pacid=23156521 polypeptide=Lus10026208 locus=Lus10026208.g ID=Lus10026208.BGIv1.0 annot-version=v1.0 MAQQFSTLFPLLLLTLSFPFTSSFTIIVSDSSNNQSDATTDRVQFSSDTNRARTEPNEQEAVYDIMKATGNDWATDIPDVCRGRWHGIECVLDKDNVFHV ISLSFGALSDETAFPTCEPTTNSTISPSVTKLPHLRTLFFYRCLTHNPQPVPRFLARLAPTLQTLILRENGHVGPIPDELGSLGRLRVLDLHRNNLNGSI PGGLGRLGGLKSLDLSGNKLIGSIPSVRFSSLNVLDLSQNLLKGSIPPSICSSRRLIKLDISRNQLTGMIPKAIGGLKELIVMDLSYNRMSGPLPATVRW LTSLQALILKGNPLWSAGISSNQFEGMKMLEVLVMSNMNLTGSIPESLGGLRNLRVVHLEGNKLKGPIPNSMGELKNVSELRLNDNELTGAVPFGKEMVW RMRRKLRLHNNVGLCYEGGSGLGEEAGGPASASFLDLGIGLCYHNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	0	1
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	2.2	0.9129
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	2.8	0.8893
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	5.3	0.8695
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	6.0	0.8416
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	6.0	0.8740
					Lus10006808 [exp]	8.8	0.8322
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	9.8	0.7794
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	10.5	0.8487
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	14.1	0.7474
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	15.2	0.7869

Compare expression of checked genes

Lus10026208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.