Plant FIBer expression Database

Lus10026209 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73240 122 / 4e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042457
[exp]
255 / 5e-83 AT1G73240 486 / 6e-168 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G013300
[exp]
176 / 4e-53 AT1G73240 464 / 1e-159 unknown protein
Potri.003G213050
[exp]
65 / 9e-13 AT1G73240 276 / 4e-90 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09531 Ndc1_Nup Nucleoporin protein Ndc1-Nup
Representative CDS sequence
>Lus10026209 pacid=23156578 polypeptide=Lus10026209 locus=Lus10026209.g ID=Lus10026209.BGIv1.0 annot-version=v1.0
ATGGAGGGATACTCCATAGCAGATGTTATGCAGATAATAACTGTATTTGGCAATATCCAGCTTAAATTATCGTGGTGTGCAAGGGCTGTTTCTTCACTGA
CGGCACACTCACGCGAGGAGGACCGATATGGGGTTGCTCAGCTCTCTGGTAGCAGTGCTGCAACACTGTCAACTCTCTTGTCTTGCCTGCTAGCCGTTGA
AGCATTCATGGGTAAGAAGACGCATTTACAGTCTCCAAATCAGATGCTCGGACCAGCTGGTATTAGATGGGCTCCCTTGAACACTGGGAAACGAGATGTC
CCAATTACCAAAAGGAGAGCTGGCCCTCTACACTCAAAGGCATATGCCATCGCTGATGTTCTAAGGACTTCAATATACTGCATTGTGTCTACTTTCCACA
AGGAGATGGCTGCTAGCGCAAAAGCAGGCCTTCTCGAAAAGGACTGGATCACAGAGACCAAACCTTTGTATGGAACAAAGGAGTTGCTGTTGCAAAAGCT
TAACCTCTTCCTGGATTATCGTGCTACCTAG
AA sequence
>Lus10026209 pacid=23156578 polypeptide=Lus10026209 locus=Lus10026209.g ID=Lus10026209.BGIv1.0 annot-version=v1.0
MEGYSIADVMQIITVFGNIQLKLSWCARAVSSLTAHSREEDRYGVAQLSGSSAATLSTLLSCLLAVEAFMGKKTHLQSPNQMLGPAGIRWAPLNTGKRDV
PITKRRAGPLHSKAYAIADVLRTSIYCIVSTFHKEMAASAKAGLLEKDWITETKPLYGTKELLLQKLNLFLDYRAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73240 unknown protein Lus10026209
[exp]
0 1
AT5G40770 ATPHB3 prohibitin 3 (.1) Lus10014604
[exp]
3.2 0.9009
AT1G16870 mitochondrial 28S ribosomal pr... Lus10020429
[exp]
9.5 0.8866
AT3G57490 Ribosomal protein S5 family pr... Lus10009952
[exp]
13.1 0.8929
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Lus10040546
[exp]
14.7 0.9002
AT3G02010 Pentatricopeptide repeat (PPR)... Lus10035164
[exp]
15.2 0.8585
AT3G09630 Ribosomal protein L4/L1 family... Lus10019904
[exp]
16.2 0.8938
AT2G42740 RPL16A ribosomal protein large subuni... Lus10029824
[exp]
18.0 0.8777
AT5G02050 Mitochondrial glycoprotein fam... Lus10024351
[exp]
18.1 0.8777
AT1G79220 Mitochondrial transcription te... Lus10031184
[exp]
22.9 0.8653
AT4G20020 unknown protein Lus10036589
[exp]
23.5 0.8588

Lus10026209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.