Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73240 149 / 2e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042457 [exp] 266 / 8e-88 AT1G73240 486 / 6e-168 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013300 [exp] 206 / 4e-65 AT1G73240 464 / 1e-159 unknown protein Potri.003G213050 [exp] 179 / 4e-57 AT1G73240 276 / 4e-90 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026210 pacid=23156499 polypeptide=Lus10026210 locus=Lus10026210.g ID=Lus10026210.BGIv1.0 annot-version=v1.0 ATGAATGAACCATGTAGTTCACTCGAACTGACATATCCTGTGCTACATACAAAAAGGTTCATATTTGCCCCGCCAAAAGGATCAGCTGCTGCAGAAACAA ATCCAACTGAGCCGCTTATTGCAGCCCTGGAAGAAACCGCCTCTGATTCTCTTCCACAGTATCTTGCGTATCTCGACCTTTGCATGGTATGTGAAAACAA TGTTGATATTTGGAGGAGAGCTGCATTTTTTGAAGAAACTGGTGAGACATACAGAAAAGTAACAGCTGTGAGCTTGAAGCCATTGGAAGAGCTTGCTTCT AAGTTATGTGAAGGTTTGGAAGGTAGTTCTGCTGACATGGAGTACCAACTATCCAAACAGCTACAATCAGCTACCGATCCACAACTGCCTTCAAGTAGTT ATGAACCACTGAACAACTTTCAGGTAAATGGCAGTTAG
AA sequence Show only first row Show all	>Lus10026210 pacid=23156499 polypeptide=Lus10026210 locus=Lus10026210.g ID=Lus10026210.BGIv1.0 annot-version=v1.0 MNEPCSSLELTYPVLHTKRFIFAPPKGSAAAETNPTEPLIAALEETASDSLPQYLAYLDLCMVCENNVDIWRRAAFFEETGETYRKVTAVSLKPLEELAS KLCEGLEGSSADMEYQLSKQLQSATDPQLPSSSYEPLNNFQVNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73240			unknown protein		Lus10026210 [exp]	0	1
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	4.6	0.9058
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	4.9	0.8943
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	5.7	0.8988
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	6.6	0.9049
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	11.7	0.8912
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	14.1	0.8792
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	14.3	0.8929
AT1G73240			unknown protein		Lus10026211 [exp]	16.5	0.8621
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	17.5	0.8528
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	18.9	0.8822

Compare expression of checked genes

Lus10026210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.