Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51120 150 / 3e-44 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G50680 149 / 9e-44 AP2_ERF AP2/B3 transcription factor family protein (.1) AT3G61970 116 / 1e-31 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 114 / 7e-31 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 111 / 6e-30 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT1G01030 112 / 1e-29 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT4G01500 110 / 4e-29 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 107 / 5e-28 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G11580 105 / 8e-28 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT1G68840 103 / 1e-26 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036282 [exp] 126 / 3e-35 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10034276 [exp] 110 / 3e-30 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10041487 [exp] 112 / 2e-29 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021707 [exp] 109 / 2e-28 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 107 / 4e-28 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 100 / 5e-25 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10018440 [exp] 57 / 1e-09 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10029431 [exp] 51 / 1e-08 AT2G36080 69 / 3e-16 AP2/B3-like transcriptional factor family protein (.1.2) Lus10011245 [exp] 54 / 2e-08 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212800 [exp] 160 / 9e-48 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 146 / 9e-43 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 144 / 5e-42 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.002G181600 [exp] 113 / 1e-29 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.014G107200 [exp] 112 / 2e-29 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 110 / 2e-28 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 109 / 3e-28 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.010G129200 [exp] 106 / 3e-27 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 105 / 3e-27 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.016G074500 [exp] 105 / 6e-27 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026212 pacid=23156586 polypeptide=Lus10026212 locus=Lus10026212.g ID=Lus10026212.BGIv1.0 annot-version=v1.0 ATGGCAGAAGATGCATCTTCCTCCTCCATGAGGATTATCGTCTCCCATCATCGCGGGGATCAGAATGTCAGTAACGAAACTCCGAAATGGTGCCGTACAC ATCTTTTCCAGAAAGAGCTAACTCCGAGCGACGTTGGAAAGCTGAATAGGTTGGTGATCCCCAAGAAATTTGCGCTCAAGTACTTCTCTAATAATTATAC CCTTAATGAATATGACAAGGACAATGACGTGGAGCTCGTGTTCTACGACAAGGGAATGAAGTCCTGGAGATTCAGGTACTGCTATTGGAGGAGCAGTCAG AGTTTCGTGTTTACCAGAGGGTGGAATCGGTTTGTCAAAGATAAAAAATTGAAGGAAAAAGATATTATCACGTTTTATAGATGTAACGTTGCAGAGCATC ATCAGTTTTTCTTCATAGATATAACTCGCCACAGATCATCGTATGAAGCAAATGCAAATGGGAGTAGCACTGAAATGGATTTAATTGGGTTTAATTTGAG ACCGCTTATGACTCATAAGGAAGAAACATTGTTAGCTACCAACAATATTGATGTACAGGGGAAAGGTGTTAGACTCTTTGGTGTTCAATTATTGTAA
AA sequence Show only first row Show all	>Lus10026212 pacid=23156586 polypeptide=Lus10026212 locus=Lus10026212.g ID=Lus10026212.BGIv1.0 annot-version=v1.0 MAEDASSSSMRIIVSHHRGDQNVSNETPKWCRTHLFQKELTPSDVGKLNRLVIPKKFALKYFSNNYTLNEYDKDNDVELVFYDKGMKSWRFRYCYWRSSQ SFVFTRGWNRFVKDKKLKEKDIITFYRCNVAEHHQFFFIDITRHRSSYEANANGSSTEMDLIGFNLRPLMTHKEETLLATNNIDVQGKGVRLFGVQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Lus10026212 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10020790 [exp]	1.0	0.8206
AT3G14880			unknown protein		Lus10013746 [exp]	3.9	0.7779
AT3G18790			unknown protein		Lus10008883 [exp]	4.0	0.7382
					Lus10040955 [exp]	6.5	0.7528
AT3G51560			Disease resistance protein (TI...		Lus10014583 [exp]	9.8	0.6554
AT4G29490			Metallopeptidase M24 family pr...		Lus10037379 [exp]	11.7	0.7881
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	17.1	0.6539
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	19.1	0.7469
AT3G26740		CCL	CCR-like (.1)		Lus10041522 [exp]	19.7	0.7719
AT5G17680			disease resistance protein (TI...		Lus10029722 [exp]	27.7	0.7031

Compare expression of checked genes

Lus10026212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.