Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05610 393 / 3e-133 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT5G48300 298 / 1e-95 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT5G19220 245 / 2e-75 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 243 / 2e-74 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 234 / 3e-71 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 233 / 8e-71 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042456 [exp] 715 / 0 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10025187 [exp] 299 / 4e-96 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 299 / 4e-96 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10023553 [exp] 241 / 9e-74 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10034053 [exp] 237 / 7e-72 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10040437 [exp] 231 / 3e-70 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10007209 [exp] 229 / 3e-69 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010515 [exp] 224 / 4e-67 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010088 [exp] 218 / 7e-65 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001700 [exp] 443 / 3e-152 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.007G146100 [exp] 432 / 3e-148 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.014G171800 [exp] 299 / 5e-96 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.008G195100 [exp] 240 / 2e-73 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.005G229700 [exp] 236 / 7e-72 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.009G118800 [exp] 236 / 7e-72 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.004G157100 [exp] 236 / 1e-71 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.002G033400 [exp] 236 / 1e-71 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 232 / 2e-70 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10026213 pacid=23156452 polypeptide=Lus10026213 locus=Lus10026213.g ID=Lus10026213.BGIv1.0 annot-version=v1.0 ATGGTGATGGCATTTCAGCTCTACTCTGCTTCTTCAGTCTCAATTCTCCATCCAAGGCTCCCCCATACTACTGATAATGATGTTACTAAACCATCATCAT CATTACTTACTCGTAACAGCTCACAAATTGCATCCTGCTTATCTTCCTCACAACGTTCCAAATTATTCGTATCAAACTCCCATAATCCACATTACCACAC CTCACCACCCCACTTGGCACCACTAGACCAGAGTGTTGCGGCGGTTGTATTTGGGGACGGATCGCTGGACTCGACCAGGCTGTACCCTCTGACCGTTAGG AGATCGGAGTCAGCCATCCCCATTGCGGCAAACTACAGGCTGATAGATGTGGTGGTAAGCAACTGCATCAACAGCAACGTGAACAAGATCTATGTCCTCA CCCAATTCAACTCCACTTCCCTCAACTCCCACCTCGTCAAGGCCTACTCTGGTGTAGGCCTTGGCCGCAGTGGTGGGTTTGTGGAAGTCGGGAGTGCTGA TGCTATAAGAAGATGCTTGTGGGTAATGGAGGAGTACCCTGTGTCTGAATTCCTTATACTTCCAGGACACCATCTCTACAGGATGGACTACAAGAAACTC ATAGAGGCTCATCGGAACAGCAATGCTGATATAACAATTGCTGCAGCATCATCAATATTGACTACTGATTCTTCAACAAGTACTGGTGATCATGCCTTGG GACAATTGGAGGTGGACTCACATAATCAAGTTACTGCTTTCCATGCTCAATCTGGGAGAAACCCACAAGAGAAGTCGAAAAAGTGGAATGGCATGACCAA AACTGGGAGTGGAATGCTTAGAAACATGGGGATATACGTGATCAATAGGGAGATGCTGAATAAGCTTGTGAATGAAAGTTTTCCAGAGGCAATAGACTTG GGAAGTGAAGTGATAAAGGGATCCATATCCAATGGACTAAAGGTACAAGCTTATGTATTCGATGGGTATTGGGAGGATATGGAGAGCATAGCAGCTTTTT ACAGAGCCAATTTGGAATCCATCAACACATCAAACACTTGTTATGGTTTCTACGAGACGGAGTCGCCACTGTACGGCATCCCAAGGTGTCTACCTCCGAC GACAGTGAGCGGTGCTGTGATTACAGAGAGTGTAATTGGAGATGGTTGCATCCTCAATAAGTGCAGAATCAAAGGGAGCGTGGTGGGAATGAGGAGCAGG ATTGGGGATAGAGCTGTAATTGAAGATTCAGTAATCCTGGGCTCTGATATCTATCACTATGATAAGAATATTGGAGGAGTAGAGGAGAGGAGCTTTGATG TTCCAATTGGGATCGGAGATGGCACTCTGCTCAGGAAAGCAGTTGTTGACAAGAATGCAAGAATTGGCAGAAATGTCAAGGCAATATACGCGGTTTGA
AA sequence Show only first row Show all	>Lus10026213 pacid=23156452 polypeptide=Lus10026213 locus=Lus10026213.g ID=Lus10026213.BGIv1.0 annot-version=v1.0 MVMAFQLYSASSVSILHPRLPHTTDNDVTKPSSSLLTRNSSQIASCLSSSQRSKLFVSNSHNPHYHTSPPHLAPLDQSVAAVVFGDGSLDSTRLYPLTVR RSESAIPIAANYRLIDVVVSNCINSNVNKIYVLTQFNSTSLNSHLVKAYSGVGLGRSGGFVEVGSADAIRRCLWVMEEYPVSEFLILPGHHLYRMDYKKL IEAHRNSNADITIAAASSILTTDSSTSTGDHALGQLEVDSHNQVTAFHAQSGRNPQEKSKKWNGMTKTGSGMLRNMGIYVINREMLNKLVNESFPEAIDL GSEVIKGSISNGLKVQAYVFDGYWEDMESIAAFYRANLESINTSNTCYGFYETESPLYGIPRCLPPTTVSGAVITESVIGDGCILNKCRIKGSVVGMRSR IGDRAVIEDSVILGSDIYHYDKNIGGVEERSFDVPIGIGDGTLLRKAVVDKNARIGRNVKAIYAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	2.4	0.9246
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	3.2	0.9404
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	4.9	0.9353
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	6.0	0.9202
AT1G73875			DNAse I-like superfamily prote...		Lus10042985 [exp]	8.0	0.8526
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	11.4	0.9174
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	13.4	0.9167
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	15.0	0.9022
AT5G03795			Exostosin family protein (.1)		Lus10016058 [exp]	15.5	0.9053
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	16.0	0.9012

Compare expression of checked genes

Lus10026213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.