Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13670 1062 / 0 Protein kinase family protein (.1) AT2G25760 983 / 0 Protein kinase family protein (.1.2) AT5G18190 952 / 0 Protein kinase family protein (.1) AT3G03940 949 / 0 Protein kinase family protein (.1) AT3G03930 349 / 2e-115 protein kinase-related (.1) AT4G28860 199 / 3e-57 CKL4 casein kinase I-like 4 (.1.2) AT1G03930 200 / 2e-56 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT2G19470 198 / 2e-56 CKL5 casein kinase I-like 5 (.1) AT4G28880 198 / 2e-56 CKL3 casein kinase I-like 3 (.1) AT4G26100 198 / 4e-56 CKL1, CK1 casein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042455 [exp] 1305 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 1189 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 1057 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 989 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 936 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 914 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10014152 [exp] 902 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10023628 [exp] 898 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10037565 [exp] 893 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 1095 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 1092 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 1003 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 999 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 966 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G189100 [exp] 954 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 937 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 202 / 2e-57 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 202 / 3e-57 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 201 / 7e-57 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026214 pacid=23156549 polypeptide=Lus10026214 locus=Lus10026214.g ID=Lus10026214.BGIv1.0 annot-version=v1.0 ATGCCTGAGCTCCGTAGAGGTGTACGCAGAGGTCGCACAGGGTTAGCGCCTCAAAACGGACAATCCGACCTTGCCGCCGTGCAGGGTTGTGTCAAGACTC GCCGCGCCGCCGTTTCCGGAGAGGCTAAGTGGCCAAGGACTCGATTGGAGGCAAAGCGCTTGAAGGAGAAAGAAGAGCAAGAGACTCAAAGGGAGCTTGA CGGTGATAAGGTGGTTGTGATATGTGATAGAGAAGAGAGCGGAGGACAAGGGAAAGCCCATAATTTGGCTCCCGCTGTTGATCTTGAAGCAAGACTACAG ATTGAGAAAGTTGGTGAAATGGGTGACGAAAGTGGTGGTTTGAGTGCTAATAATGCTGCTGGGCAGGAGGAAGAAGGGACTACTGCCCCATTCCCAGAAA GGGTTCAAGTGGGGGGATCACCACTGTACAAGATAGAAAGGAAGTTGGGCAAAGGTGGCTTCGGTCAAGTGTTTGTTGGACGTCGTCTTAGTGGTGGAAC TGGTGGGAGTGGGATGGGAGCTGGTGCAGCGGAGGTGGCTGTGAAATTTGAACACAGAAACAGTAAAGGCTGTAACTATGGCCCCCCTTATGAATGGCAA GTTTACAACACTCTTGGTGGCAGCTATGGGGTGCCAAAAGTGCATTTCAAAGGAAGGCATGGGGATTATTACGTAATGGTTATGGATATACTGGGGCCAA GCCTGTGGGATGTTTGGAATTCTTCTGGGCAAGCGATGTCTGCGGAAATGGTGTCTTGTATAGCTGTTGAGGCTCTTACCATCTTAGACAAAATGCACTC ACGAGGTTATGTGCATGGAGATGTAAAGCCCGAGAATTTCTTACTTGGTCAGCCTGGGACATCACAGGAGAAAAAGCTGTATCTTGTGGACCTGGGATTA GCGACAAAATGGAGGGATAGTAGCAGTGGCGAGCATGTTGCATACGACCAACGTCCTGATATGTTTAGGGGTACTGTGCGATATGCTAGCGTTCATGCTC ACCTGGGAAGGACTGCCAGCCGGAGAGATGACCTTGAATCCCTGGCTTACACACTTATCTTCTTACATCGAGGCAGATTGCCATGGCAAGGCTATCAGGG TGACAACAAGTCCTTCCTAGTTTGCAAAAAGAAAATGGCAACATCCCCAGAAATGCTATGCTGCTTTTGTCCTCAACCTCTTAAACAATTTCTTGAGTTT GTGGTCAATTTGAAATTTGACGAGGAACCAAACTATTCTAAGCTTATATCTTTATTTGAGGGCTTGTTGGGGCCAAACCCAGCTATAAGGCCTTTAAATA CCGAGGGTGCTCAAAAGATCATCTCTCAAGTTGGTCAGAAACGTGGTAGGTTAAATATTGAGGAAGATGACGGGCAACCAAGGAAGAAGGTTCGCCTTGG AGTTCCTGCTACGCAGTGGATCTCAATATATAATGCCAGGCGACCAATGAAACAGAGGTACCACTACAATGTCGCTGATGGAAGGTTGGCACAACATGTG GAGAGAGGAACTGCTGATGGTCTTCTGATAAGTTGTGTGGCATCATGTTCCAATCTTTGGGCATTGATCATGGATGCTGGAACTGGCTTTTCTAGTCAAG TATATGAACTGTCCCCCTTTTTTTTGCATAAGGAGTGGATAATGGAACAATGGGAGAAGAACTACTACATTAGTTCAGTTGCTGGTGCAAATAACGGAAG CTCACTTGTGGTCATGTCCAAAGGCACGCAATACACTCAACAATCGTACAAGGTGAGCGATTCATTTCCATTTAAGTGGATCAACAAGAAGTGGAAAGAA GGATTTCATGTGACCTCAATGGCCACCGCTGGGTCCCGGTGGGGAATTGTCATGTCTCGCAATGCTGGGTTCAGTGATCAGGTTGTGGAGCTTGATTTTC TCTATCCAAGTGAAGGCATTCACCGACGGTGGGATGGTGGCTTCAGAATCACATCAACAGCAGCAACATCTGATCAAACCGCTCTTATCTTGAGTGTTCC GAGGCGCAGACCTAATGACGAAACTCAAGAGACTTTGCGTACATCTCAATTTCCAAGTACACACGTGAAGCATGTCTCTGCTATGGGAGGACGGTCTCAT GAGAGAGATGCGGCGCAAAATAAACAGAAATTAGAGGGAAGATTGTTCTGA
AA sequence Show only first row Show all	>Lus10026214 pacid=23156549 polypeptide=Lus10026214 locus=Lus10026214.g ID=Lus10026214.BGIv1.0 annot-version=v1.0 MPELRRGVRRGRTGLAPQNGQSDLAAVQGCVKTRRAAVSGEAKWPRTRLEAKRLKEKEEQETQRELDGDKVVVICDREESGGQGKAHNLAPAVDLEARLQ IEKVGEMGDESGGLSANNAAGQEEEGTTAPFPERVQVGGSPLYKIERKLGKGGFGQVFVGRRLSGGTGGSGMGAGAAEVAVKFEHRNSKGCNYGPPYEWQ VYNTLGGSYGVPKVHFKGRHGDYYVMVMDILGPSLWDVWNSSGQAMSAEMVSCIAVEALTILDKMHSRGYVHGDVKPENFLLGQPGTSQEKKLYLVDLGL ATKWRDSSSGEHVAYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPQPLKQFLEF VVNLKFDEEPNYSKLISLFEGLLGPNPAIRPLNTEGAQKIISQVGQKRGRLNIEEDDGQPRKKVRLGVPATQWISIYNARRPMKQRYHYNVADGRLAQHV ERGTADGLLISCVASCSNLWALIMDAGTGFSSQVYELSPFFLHKEWIMEQWEKNYYISSVAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKE GFHVTSMATAGSRWGIVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITSTAATSDQTALILSVPRRRPNDETQETLRTSQFPSTHVKHVSAMGGRSH ERDAAQNKQKLEGRLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13670			Protein kinase family protein ...		Lus10026214 [exp]	0	1
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10039918 [exp]	8.3	0.8530
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	10.1	0.8622
AT1G69070			unknown protein		Lus10036815 [exp]	14.8	0.8643
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	22.6	0.8452
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	29.8	0.8397
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	32.9	0.8429
AT4G12540			unknown protein		Lus10025820 [exp]	37.6	0.8436
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	38.7	0.8330
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	40.4	0.8289
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	42.2	0.8416

Compare expression of checked genes

Lus10026214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.