Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80690 261 / 4e-88 PPPDE putative thiol peptidase family protein (.1) AT5G25170 239 / 2e-79 PPPDE putative thiol peptidase family protein (.1) AT2G25190 226 / 4e-74 PPPDE putative thiol peptidase family protein (.1) AT1G47740 209 / 5e-67 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 216 / 1e-65 unknown protein AT4G17486 192 / 4e-61 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 187 / 6e-59 PPPDE putative thiol peptidase family protein (.1) AT4G25660 86 / 7e-20 PPPDE putative thiol peptidase family protein (.1) AT4G25680 86 / 8e-20 PPPDE putative thiol peptidase family protein (.1) AT3G07090 51 / 2e-07 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042454 [exp] 414 / 9e-148 AT1G80690 265 / 1e-89 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 244 / 1e-81 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 243 / 2e-81 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10005341 [exp] 236 / 1e-78 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 232 / 6e-77 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 204 / 2e-65 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 201 / 3e-64 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 198 / 2e-63 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 198 / 2e-63 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180400 [exp] 266 / 2e-90 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 263 / 6e-89 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 244 / 4e-81 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 242 / 2e-80 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.004G151200 [exp] 214 / 3e-69 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 213 / 5e-69 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 211 / 3e-68 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 209 / 3e-67 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 207 / 7e-67 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 197 / 6e-63 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10026215 pacid=23156456 polypeptide=Lus10026215 locus=Lus10026215.g ID=Lus10026215.BGIv1.0 annot-version=v1.0 ATGCTCTGTGGGAAAAGCTTTTCGAGGTCGGGAGAAACTAAGAAGGGATCAGTCCCAGTGTTCCTCAATGTATATGACCTCACTCCCATTAATGGCTTCG CTTACTGGGTTGGTCTCGGAGTTTATCATTCTGGTGTTCAAGTTCACAACGTGGAGTATGCGTTTGGGGCACACGAGTACCCAACGACAGGGATATTTGA AGGGGTGCCTAAGCAATGTGAGGGCTTCACTTTCCGCAAGTCAATTCTGATAGGGAAGACTGAGTTGGGTCCATGTGAGGTCAGGAAAGTGATGGAGGAT TTGGCTCATGAATACAAAGGCAATGCTTACAACTTGATCACCAAGAACTGCAACCACTTCTGCAATGCTGCTTGTCTTAAACTCACTTCCAACCCCATCC CTAGCTGGGTCAACCGCCTTGCCCGAATCGGATTTCTATGCAATTGTGTGCTTCCTTCGCATATATGTTCGACCAAAGTTCGGCATGATAGCAGCAGGCC TGAGGAGGACGCCAAGCTATCTTGTGATGTTGTAATTGTGGACAAGAGTTTGAGAGACGGTGGAACGTATCATCATGATGGGTTCACTACTACTCCCTCT TCTAAAACTTGCTCATCTTCATCATCTTCTCCCGCCACTACTACTACTACTACAACTACTCTAACAAGTGGCAATGATGATGAGACTGATCATCAAGTTA GGGGGAGGAGTAGAACCAGGAGACGACGTCATGGCGATATCCCTCCTTGTTCCCCTTTGATTACTTCTTCTTCATCACCCTCAGCTGCATCATGA
AA sequence Show only first row Show all	>Lus10026215 pacid=23156456 polypeptide=Lus10026215 locus=Lus10026215.g ID=Lus10026215.BGIv1.0 annot-version=v1.0 MLCGKSFSRSGETKKGSVPVFLNVYDLTPINGFAYWVGLGVYHSGVQVHNVEYAFGAHEYPTTGIFEGVPKQCEGFTFRKSILIGKTELGPCEVRKVMED LAHEYKGNAYNLITKNCNHFCNAACLKLTSNPIPSWVNRLARIGFLCNCVLPSHICSTKVRHDSSRPEEDAKLSCDVVIVDKSLRDGGTYHHDGFTTTPS SKTCSSSSSSPATTTTTTTTLTSGNDDETDHQVRGRSRTRRRRHGDIPPCSPLITSSSSPSAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	3.3	0.9151
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	4.0	0.8789
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	6.6	0.9123
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	9.5	0.8919
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	9.8	0.9058
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	10.0	0.8988
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	10.8	0.8657
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	13.0	0.8930
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10036227 [exp]	13.3	0.8491
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	13.8	0.8813

Compare expression of checked genes

Lus10026215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.