Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 222 / 1e-74 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 55 / 2e-09 unknown protein AT3G28970 40 / 0.0003 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039198 [exp] 237 / 2e-80 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 238 / 2e-79 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 179 / 1e-57 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 177 / 7e-57 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10009599 [exp] 62 / 5e-12 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 62 / 5e-12 AT3G12760 383 / 3e-136 unknown protein Lus10005235 [exp] 41 / 0.0001 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10030685 [exp] 40 / 0.0002 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047900 [exp] 237 / 3e-80 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 235 / 8e-80 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.018G112200 [exp] 199 / 1e-65 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 62 / 3e-12 AT3G12760 415 / 1e-148 unknown protein Potri.004G122100 [exp] 43 / 3e-05 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 41 / 0.0001 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10026216 pacid=23156570 polypeptide=Lus10026216 locus=Lus10026216.g ID=Lus10026216.BGIv1.0 annot-version=v1.0 ATGAAAGCTGAGAAACAGGGATACTTTACACTGGATGAGTGGCGAAGAGGCCTTAAAGCATTGAGAGCTGAAAATTTAACTAAATTGAAAAAGGCTCTCC CAGAGCTTGAGAAAGAGGTTAAGAGGCCATCGAACTTTGTGGATTTCTATTCCTATGGGTTCCGGTATTGCCTGATGGGTATGGCAAAGGAGAAACAGAA AAGCATAGACATAGAAAACATCTGCCAGTTACTTGATCTTGTTATGGGATCCCAATACCGTATTCAGGTTGATTACTTCATTGAGTATCTCAAGATTCAG AGCGATTACAAAGTCATAAACCTGGACCAATGGATGGGGTTTTACCGTTTCTGCAACGAGATAAGTTTCCCAGAACTTAGCAACTATGATCCAGAACTTG CATGGCCTATAATTCTGGACAATTTTGTAGAATGGATCCGATTGAAAAGGGCCTCTTAG
AA sequence Show only first row Show all	>Lus10026216 pacid=23156570 polypeptide=Lus10026216 locus=Lus10026216.g ID=Lus10026216.BGIv1.0 annot-version=v1.0 MKAEKQGYFTLDEWRRGLKALRAENLTKLKKALPELEKEVKRPSNFVDFYSYGFRYCLMGMAKEKQKSIDIENICQLLDLVMGSQYRIQVDYFIEYLKIQ SDYKVINLDQWMGFYRFCNEISFPELSNYDPELAWPIILDNFVEWIRLKRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	0	1
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	2.0	0.9220
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	2.4	0.9186
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	3.5	0.9150
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	3.9	0.9170
AT4G35905			unknown protein		Lus10028420 [exp]	5.5	0.8926
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	8.0	0.9094
AT5G27830			unknown protein		Lus10020660 [exp]	8.5	0.8993
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	9.0	0.8949
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	9.2	0.9067
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	9.9	0.9113

Compare expression of checked genes

Lus10026216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.