Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 79 / 2e-18 unknown protein AT5G06950 63 / 2e-12 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 63 / 2e-12 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 58 / 2e-10 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 57 / 3e-10 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT4G18650 55 / 1e-09 transcription factor-related (.1) AT5G06839 56 / 2e-09 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G58330 55 / 2e-09 ZW2 transcription factor-related (.1) AT4G18690 54 / 6e-09 unknown protein AT1G22070 52 / 2e-08 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042453 [exp] 246 / 4e-83 AT3G14880 145 / 3e-42 unknown protein Lus10013746 [exp] 108 / 1e-29 AT3G14880 141 / 5e-41 unknown protein Lus10039193 [exp] 108 / 2e-29 AT3G14880 135 / 5e-39 unknown protein Lus10039196 [exp] 106 / 1e-28 AT3G14880 135 / 1e-38 unknown protein Lus10013711 [exp] 81 / 7e-19 AT3G14880 251 / 2e-84 unknown protein Lus10025265 [exp] 76 / 6e-17 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10027812 [exp] 68 / 4e-14 AT1G58330 116 / 1e-31 transcription factor-related (.1) Lus10024140 [exp] 61 / 1e-11 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 61 / 2e-11 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 124 / 1e-35 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 77 / 8e-18 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 71 / 1e-15 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.003G194600 [exp] 61 / 3e-11 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 61 / 3e-11 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.001G029800 [exp] 60 / 5e-11 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 58 / 2e-10 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.002G090700 [exp] 56 / 1e-09 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.016G036500 [exp] 56 / 2e-09 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G058800 [exp] 54 / 3e-09 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026217 pacid=23156619 polypeptide=Lus10026217 locus=Lus10026217.g ID=Lus10026217.BGIv1.0 annot-version=v1.0 ATGCCGACCATGTCCGGCGCTAGGCCGGCTATCGGAGGAGGAGGAGGCATCTCGTCGTTCAAGGACTTCTTCGACCGATGGTTGGAGGAGCACGATCAGC TACTAAAGATACTGACGTCAGCCACCGCCGAAAACGGCGGCAACCAACCAGAGTTCCTCCGGGTTCTAGCGGGTCGGGTCATGGATCACTACGAGATTTA CTACCGGGCCAAGTCGGAGTGGGCCAGTAAAGACGTGTTGGCAATGTTGTCGCCTTCCTGGACAAGCTCTTTAGAGGACGCTTTCCTCTGGATCCGAGGC TGGCGTCCTTCCACGGCTTTCCATCTCCTCTACTCCAAATCAGGCCTCCAATTCACCGCTGATTCTTCTTCTGATCAATCGACGATCCAAGGCCTGCTCC GAAGCCTGAATTCCGCCGACGACCTAGCTGGCCTCTCCGCCGCATGGATGAGCTCCAGCGGATGA
AA sequence Show only first row Show all	>Lus10026217 pacid=23156619 polypeptide=Lus10026217 locus=Lus10026217.g ID=Lus10026217.BGIv1.0 annot-version=v1.0 MPTMSGARPAIGGGGGISSFKDFFDRWLEEHDQLLKILTSATAENGGNQPEFLRVLAGRVMDHYEIYYRAKSEWASKDVLAMLSPSWTSSLEDAFLWIRG WRPSTAFHLLYSKSGLQFTADSSSDQSTIQGLLRSLNSADDLAGLSAAWMSSSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10026217 [exp]	0	1
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	10.4	0.7308
AT2G26520			unknown protein		Lus10023859 [exp]	12.8	0.6142
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	14.7	0.7009
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	16.2	0.7500
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	16.5	0.7188
AT1G29220			transcriptional regulator fami...		Lus10007288 [exp]	24.5	0.6118
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	26.2	0.6795
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	26.2	0.7028
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	27.5	0.6666
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	30.2	0.6821

Compare expression of checked genes

Lus10026217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.