Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53330 441 / 1e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 185 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 180 / 5e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 181 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 174 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 176 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 175 / 7e-48 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 175 / 1e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 173 / 2e-47 RPF2 rna processing factor 2 (.1) AT1G63330 172 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042452 [exp] 901 / 0 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 189 / 1e-52 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 187 / 4e-52 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 174 / 1e-48 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038804 [exp] 177 / 6e-48 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 173 / 6e-48 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 175 / 9e-48 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 171 / 6e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 169 / 4e-45 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G108500 [exp] 544 / 0 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 197 / 4e-57 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 183 / 3e-52 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075900 [exp] 186 / 9e-52 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 185 / 2e-51 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 186 / 4e-51 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 183 / 2e-50 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 176 / 3e-49 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 178 / 1e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 176 / 4e-48 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026218 pacid=23156468 polypeptide=Lus10026218 locus=Lus10026218.g ID=Lus10026218.BGIv1.0 annot-version=v1.0 ATGAGTGATCTCCCAATTACCCCGGGGGTGCCGCTGGCTGAAAGAATGGGAGTGGAAAATATGCATCAACGCGGGAAGCTACAGAAGCTGATTTCTCCGT TCCGACAAGCATCACTTCTGCGGATGGAGAAGGATCCGAAGCTTGCTCTCGACCTCTTTCGTAACCCAAATCCCACTCCTAATCCTCAAGCCTCCGCCAA GCCGTTTCGTCGCTCTCTCCTTTCCTATGATCTCATTATCACCAAGCTGGGCAGCGCCAAAATGTTCCTCGAGATGGAGGAGGTCCTTTCTCAAATGAAG AGCGAGACCCGATTTGCTGCTAAAGAAGTCATTTTCTGCAACGCCATCAAGTTCTACGGCCGTGCTCGCCGACTCGAAGATGCAGTCAAACTGTTCGACG AAATTCCCTCGTTCCACTGTCGACGGACCACGAGGTCATTCAATTCGTTGCTAAACGCTTTTCTGATGTGCAAAGAAGCTGATAGAATGATGGAATTATA TGCAGGTATCGAGGAATACGGACGACCCGATGCCTGTACTTACAATATTCTGATTCGTGGGTGTTTCCTTAAGGGGTCGGTTGATCATGCCTGGAAGCTG TTCGATGAAATGCTTTGCAAAAGAATTTCCCCGACCGTTGCAACTTTCGTGATTTTTGTTAAAGGGCTTTGTTTGGCTAACAGGTTGGAAGAGGCTGTGA AACTCAAGAACGATATGGTTAAGGTGTATGGGATCATTCCGAATGCATTTATCTATTCATCACTGATTAAATCGGTTTGTGGGATTGGTGAGTTGAATCA GGCTTTTCAACTCAAAGATGAGATGGTTGCAAAAGGGATAGAATTGGGTTCCCCTGTATACTCGACTATGATTAGCGGGCTTTTTGAAGCCGGTAGAAAG GAGGAAGCTTTGGAGCTTTGGGAGGAGATGAATCGGAGTGAGTGTACACCTGATACGGTGACTTACAATGTGATGATTAATGGGTTCTGCATGAACATGG ATTTCAAAGCATCCCACGAGATGTTGGATAAAATGTCAGATAGTGGGTGTAAACCAGACGTCGTGAGTTACAACATCATTCTCCGTGGGTTGTGCAAAGA TGGGAGATTGGTCTGCGCAAACGAGTTGTTTGAAAGCATGGCAGGGAGAGGCTGTTTGCCTGATGTAATTTCGTATAGAATTCTCTTCAGAGGGCTTTGT GACGGGATGCAGTTGAAAGATGCAGCTTTTATCTTGGACGAGATGATCTTCAAGGGCTTTACTCCTCATACTAGCACCGTATGTGCTTTCGTTGAGAAGT TGTGCGAGGGGAGGAATAAGGTAATGCTTTGGTCGGTTTTGGATACACTTGCTAAGGGAAATGCAATCGATGCAGACACATGGGCGGTGGTTGTAAACGC CGCCGTGGCGTTTGGAGAAGATGCATTCAGTACTATGATCTATGACCGTGTTGACAGTTTGGTTGTGTCCTAG
AA sequence Show only first row Show all	>Lus10026218 pacid=23156468 polypeptide=Lus10026218 locus=Lus10026218.g ID=Lus10026218.BGIv1.0 annot-version=v1.0 MSDLPITPGVPLAERMGVENMHQRGKLQKLISPFRQASLLRMEKDPKLALDLFRNPNPTPNPQASAKPFRRSLLSYDLIITKLGSAKMFLEMEEVLSQMK SETRFAAKEVIFCNAIKFYGRARRLEDAVKLFDEIPSFHCRRTTRSFNSLLNAFLMCKEADRMMELYAGIEEYGRPDACTYNILIRGCFLKGSVDHAWKL FDEMLCKRISPTVATFVIFVKGLCLANRLEEAVKLKNDMVKVYGIIPNAFIYSSLIKSVCGIGELNQAFQLKDEMVAKGIELGSPVYSTMISGLFEAGRK EEALELWEEMNRSECTPDTVTYNVMINGFCMNMDFKASHEMLDKMSDSGCKPDVVSYNIILRGLCKDGRLVCANELFESMAGRGCLPDVISYRILFRGLC DGMQLKDAAFILDEMIFKGFTPHTSTVCAFVEKLCEGRNKVMLWSVLDTLAKGNAIDADTWAVVVNAAVAFGEDAFSTMIYDRVDSLVVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	0	1
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	1.7	0.7759
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	5.3	0.7497
AT3G19508			unknown protein		Lus10013875 [exp]	8.0	0.7218
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10015146 [exp]	8.8	0.7234
AT4G32175			PNAS-3 related (.1)		Lus10000238 [exp]	9.9	0.6293
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	12.0	0.6920
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	13.4	0.6948
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	13.6	0.7104
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	19.0	0.6792
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	19.6	0.6953

Compare expression of checked genes

Lus10026218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.