Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05740 783 / 0 RECQI1 RECQ helicase l1 (.1) AT1G10930 394 / 2e-123 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 392 / 6e-123 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G31360 332 / 3e-104 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 328 / 1e-102 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 187 / 5e-50 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 156 / 1e-39 RECQSIM RECQ helicase SIM (.1) AT2G33730 72 / 7e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 71 / 2e-12 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 69 / 7e-12 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042451 [exp] 1159 / 0 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10015467 [exp] 387 / 8e-120 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 325 / 5e-101 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 303 / 4e-93 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 293 / 1e-88 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 251 / 9e-74 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 231 / 2e-65 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 161 / 3e-41 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10019129 [exp] 100 / 4e-23 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019800 [exp] 873 / 0 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G015800 [exp] 382 / 1e-118 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.003G104300 [exp] 336 / 1e-105 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 326 / 1e-101 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 259 / 2e-75 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 188 / 2e-50 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 160 / 6e-41 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.010G152400 [exp] 79 / 9e-15 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 69 / 6e-12 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.012G045800 [exp] 68 / 1e-11 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10026219 pacid=23156588 polypeptide=Lus10026219 locus=Lus10026219.g ID=Lus10026219.BGIv1.0 annot-version=v1.0 ATGGCGGAGCATGATCTGGAGGTGGAGAAAGCTCGATTGATAAGCTTGGCTCTTGATTGCGGCTTCGACGAGGAGTCTGCCAACAAGTGCTTAGACCGTT TGATTTCTCTCTATGGAGAGGATGGAAGAGATTTCATCTCTGTCGAGTACTGCGCCGACGATTTCCTGGCGTCGTTGGCTGAATCCATGGAGGATTCCGA GGACTGGGACGAGGCGGACTTGCGAGCCATCGAATCTGAAGCCTGTGGCACCTTGAATGATATGTTTGAAAATGACATTGCTGCTCCTGACTCGAACAAC AACAAAGGGGAAAGCAGTTGTAGCTACATCGATCTCAGCGATGATGATTTGTCTCCAAGGAAGAAGAAGAGGCAACTACCCGACGTGATGCTACTGGACT CTTCCTCGAGTGATAGTGATGCTGATGACCTTGTTTTCCCTATCTCCCAAAGGAAGAGTACTAAAACTGCGACTCCCTCCTCACTCAACCGTTCTTCTAT ATCTATGGTACGGGGTCTTTTTACTCTTACTATCGTGTGTTTTGCTGGCATTTACAGCGTGCACTTAGGTAAGGATCGGAAGACCACTGCTGCTACTCCG GGTTCAGTTTCATCAAGCGGCTACAAAGCCCCCGTGTCAAATAATGGGCTTCTGAGTTATGAGCAATTGCAAGTGTTGGATGACATTGAGTTGGCTAACG TTGTAATATTTGGAAACAAGGCTTTACGACCATTGCAGCATAAGGCTTGTAAAGCATCTCTTGAAAAACGAGATTGTTTTGTTCTTATGCCAACTGGAGG TGGTAAAAGTCTATGCTACCAGCTTCCTGCAACTCTGAAGCCTGGTGTGACAGTAGTTGTATCTCCATTACTGTCCCTCATTCAGGACCAAATTGTTACC TTAAACCTTAAATTTGGGATACCTGCAACTTTCTTGAATTCTCAGCAAACGTCTTCCCAGGCAGCGGCAATCATCCAAGAATTGAAGAAAGAAAGGCCAT CGTGTAAACTCTTATATGTGACTCCGGAGAGGATTGCTGGAAACGCTTCTTTTTTTGAAACTCTCAAATGCTTGCATCGCAAGGACCTTCTGGCAGGTTT TGTTGTTGACGAAGCACATTGTGTCAGTCAGTGGGGGCATGATTTTCGTCCAGATTACAGGGGACTAGGATGTCTTAAACAGAACTTTCCCAATGTCCCA GTCATGGCTTTAACGGCAACAGCAACCCACGCAGTTCGTCAGGATATATTAAAATCTTTAAGAATTGAACGTGCTCTTGTCCTTGAAACAAGCTTTGATA GGCCTAATTTAAAGTATGAAGTCATTGCCAAAGCTAAAGACGCACTCAAACAGCTAGGAGAGATCATCACAGACCGCTTCAAGAAACAATGTGGGATCGT GTACTGCTTGTCTAAGAATGAATGTGTCGAGGTTTCAAAGTTCTTGAATGACAAATGCAAGATTAAGACAGCATATTACCATGCTGGTCTTGGCACTCGC CAAAGAAGTGAGGTTCAAAACAAATGGCATAACGGTGAGGTGCAGATTGTCTGTGCAACGATTGCCTTTGGGATGGGGATAGATAAAGCTGATGTGCGGT TTGTGATTCACAACACAATGTCCAAAGCAATTGAAAGCTACTATCAAGAAGCTGGTCGAGCTGGAAGGGATGGTAAACCTGCTGCTTGCATTGCCCTATT CCAGAAGAAGGATTTCAGTAGGGTTGTTTGTATGTTAAGGAGTGGACAAAGATATCAAAAGGCCAGCTTTAAGACAGCAATGGCTCAAGCAACAAAGATG AAGCAGTACTGTGAACTTAAGAACGAATGTCGCAGGCAAGCCTTGCTGGAACACTTTGAAGAGTCGTTTGATAGGAAAGCTTGCAAATCTGGTCCTAACC CGTGTGATAACTGTCTCAAAGCTTCCACATGA
AA sequence Show only first row Show all	>Lus10026219 pacid=23156588 polypeptide=Lus10026219 locus=Lus10026219.g ID=Lus10026219.BGIv1.0 annot-version=v1.0 MAEHDLEVEKARLISLALDCGFDEESANKCLDRLISLYGEDGRDFISVEYCADDFLASLAESMEDSEDWDEADLRAIESEACGTLNDMFENDIAAPDSNN NKGESSCSYIDLSDDDLSPRKKKRQLPDVMLLDSSSSDSDADDLVFPISQRKSTKTATPSSLNRSSISMVRGLFTLTIVCFAGIYSVHLGKDRKTTAATP GSVSSSGYKAPVSNNGLLSYEQLQVLDDIELANVVIFGNKALRPLQHKACKASLEKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQDQIVT LNLKFGIPATFLNSQQTSSQAAAIIQELKKERPSCKLLYVTPERIAGNASFFETLKCLHRKDLLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFPNVP VMALTATATHAVRQDILKSLRIERALVLETSFDRPNLKYEVIAKAKDALKQLGEIITDRFKKQCGIVYCLSKNECVEVSKFLNDKCKIKTAYYHAGLGTR QRSEVQNKWHNGEVQIVCATIAFGMGIDKADVRFVIHNTMSKAIESYYQEAGRAGRDGKPAACIALFQKKDFSRVVCMLRSGQRYQKASFKTAMAQATKM KQYCELKNECRRQALLEHFEESFDRKACKSGPNPCDNCLKAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10026219 [exp]	0	1
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	4.5	0.9311
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	4.9	0.9247
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	6.3	0.9330
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	6.5	0.9254
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	11.0	0.9248
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	12.6	0.9179
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	14.1	0.9225
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	14.8	0.9252
AT3G18020			Pentatricopeptide repeat (PPR)...		Lus10024513 [exp]	19.1	0.9024
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	21.2	0.9000

Compare expression of checked genes

Lus10026219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.