Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44290 121 / 4e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G44300 121 / 5e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G55260 120 / 2e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT5G55490 112 / 3e-27 GEX1, ATGEX1 gamete expressed protein 1 (.1) AT3G58550 96 / 8e-24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 59 / 3e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G73890 59 / 3e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G03103 58 / 4e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G14815 55 / 4e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 55 / 5e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042450 [exp] 290 / 1e-93 AT5G55490 541 / 0.0 gamete expressed protein 1 (.1) Lus10029726 [exp] 241 / 8e-75 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1) Lus10002182 [exp] 235 / 2e-72 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10039900 [exp] 230 / 1e-70 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1) Lus10042449 [exp] 214 / 1e-68 AT1G55260 160 / 3e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10035975 [exp] 110 / 1e-26 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10033076 [exp] 79 / 3e-17 AT2G44290 114 / 6e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10017749 [exp] 79 / 4e-17 AT2G44290 115 / 3e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10021911 [exp] 58 / 1e-09 AT1G05450 121 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137100 [exp] 189 / 4e-55 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Potri.003G217000 [exp] 140 / 3e-40 AT1G55260 149 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.001G008500 [exp] 138 / 9e-40 AT2G44290 155 / 6e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232000 [exp] 125 / 7e-35 AT2G44300 179 / 4e-57 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G195700 [exp] 121 / 2e-33 AT2G44290 145 / 6e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G085400 [exp] 56 / 2e-09 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 56 / 3e-09 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G172400 [exp] 52 / 6e-08 AT1G27950 145 / 5e-44 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1) Potri.002G050300 [exp] 52 / 7e-08 AT3G22600 117 / 3e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G056200 [exp] 52 / 7e-08 AT1G27950 149 / 1e-45 glycosylphosphatidylinositol-anchored lipid protein transfer 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10026220 pacid=23156533 polypeptide=Lus10026220 locus=Lus10026220.g ID=Lus10026220.BGIv1.0 annot-version=v1.0 ATGGGGCTGGCTCCTTGCCTGACGTACGTGACCGGTGGATCCAAAGCTCCGACGCTGGATTGTTGCTCCGGTCTGAAACAGGTGATGGAGAAGAGCACCA AGTGCCTTTGCTTGTTAATTAAAGACCGCGACGACCCCGATCTCGGCATCAAAGTCAACGTCTCCCTCGCCGCTAGCCTCCCCAACTCCTGCCACACTCC GGCTAATGTCTCCGATTGCGTCAGTATTCTGCATCTAGCACCTAATTCGGCGGACGCCAAGAAGTTTGATGGACTGGATGACTTAATCTCCAAAGGAATC AATGGAAACAGTACTACTACTGCAACTTCTGCAACTTCTGCCGGGAGCACCGGCGGGGGTGGGAGTGAACGCGGGAATGAGAAGAGCGGCGGAGAGGGAG GGATGAAGGGAGGGAACTGGTGGCGGATGGTGGTGGTGGGGATATGGGGAGGTACATGCCTTCAGAAGGAAACGGAGAGACTGGTGGATGAACTGAAGAG TTCAGCGCAATACACGAAGAGAGAGTTGGAGATTATAAAAGACACAACATTTACAGTGCTGCAGAACTCGAATCAGATACACGATTCTTTGAGTTCGGTG TATCTCAAGGTTCAAGAAGTGGTTCGGACGGCTAAGGATGCAGAGAGTCAGATCGATTCCTTGTCAAAGAAGTCAGAAGCAGTTTTCCAAAAATCGGAGG AAATCGTGGAGTCGCAAACACAACTTGAGGCAGGACAAGAGAGAATGAATGAGAATTTGAAAGCAGGGGTGACAATGTGTCATGATGCTTACAGCATCTT GGGCGAGGAAGTTAGCAACGCGAGGAACGAGGCTGTCGAGACAAAGAAGCATATTGATCAAGTCGGAGAGTCAATGTCGTCCAGGTTTCAGAATCTGCAG AGCAAAGCTGATGATATTGAAAATCTTGCTGGAAGTTCCTTGGGCAAGCAGCAAGAACTTCTAGATGTTCTACATTCCTAA
AA sequence Show only first row Show all	>Lus10026220 pacid=23156533 polypeptide=Lus10026220 locus=Lus10026220.g ID=Lus10026220.BGIv1.0 annot-version=v1.0 MGLAPCLTYVTGGSKAPTLDCCSGLKQVMEKSTKCLCLLIKDRDDPDLGIKVNVSLAASLPNSCHTPANVSDCVSILHLAPNSADAKKFDGLDDLISKGI NGNSTTTATSATSAGSTGGGGSERGNEKSGGEGGMKGGNWWRMVVVGIWGGTCLQKETERLVDELKSSAQYTKRELEIIKDTTFTVLQNSNQIHDSLSSV YLKVQEVVRTAKDAESQIDSLSKKSEAVFQKSEEIVESQTQLEAGQERMNENLKAGVTMCHDAYSILGEEVSNARNEAVETKKHIDQVGESMSSRFQNLQ SKADDIENLAGSSLGKQQELLDVLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	0	1
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	6.6	0.7745
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	7.7	0.8091
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	10.3	0.7912
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	11.1	0.7838
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	14.5	0.7424
AT5G58950			Protein kinase superfamily pro...		Lus10015436 [exp]	18.3	0.7252
AT3G25680			unknown protein		Lus10021714 [exp]	18.5	0.7602
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	20.0	0.7490
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	21.2	0.7064
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	21.7	0.7626

Compare expression of checked genes

Lus10026220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.