Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19940 270 / 5e-92 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT3G26070 52 / 8e-08 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 44 / 3e-05 plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G09820 42 / 0.0001 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042448 [exp] 413 / 4e-148 AT5G19940 250 / 9e-84 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020982 [exp] 58 / 9e-10 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10012100 [exp] 45 / 2e-05 AT1G51110 511 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276400 [exp] 303 / 5e-105 AT5G19940 279 / 2e-95 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.003G020700 [exp] 61 / 9e-11 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 58 / 4e-10 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G011700 [exp] 44 / 6e-05 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.002G183700 [exp] 40 / 0.0006 AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10026221 pacid=23156477 polypeptide=Lus10026221 locus=Lus10026221.g ID=Lus10026221.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGCTGCTTCCTCCTTCACCTTGTTACCTTCCGCCTTTAAATCCAGCAGAACCCTCAGTACTGTTTCTTCTACATCTTTCAATCCCGTCT CGGTTGCGTATCACAAACAGCGATGTAGCGCCAATTTGCGAATCGCTTGTTCCGCAACAGTTTCGTCGGACCCTCAACTTCGCACCGGTGAACCCGACGA ACTTGTTGCTTCCATCCTTTCCAAGGTGAAGCAGACAGATGGAGGCGTTTCTTTGAAGAGAGAAGAGCACCAACTAGTGGCTGAAGTTGCTCAGCAGCTG CAGGGCTACTGCGTTTCAGAGCCTGTGAAATCCCCTCTCATATTTGGAGAGTGGGACGTGGCGTACTGTTCGAATCCAACTTCGCCAGGGGGAGGTTATA GGAGTGCGATCGGCCGTCTTTTCTTCAAAACGAAGGAAATGGTTCAGGCTCTTGAAGCTCCTGACACTGTCAGAAACAAGATCAAATTCTCCCTATTGGG TTTCCTCGAAGGAGAGGTGTCTCTCAAAGGGAAATTGAAAGCTCTAGACGGTAGCTGGATTCAGGTGACATTCGAGGCACCGCATTTTAAAGTTGGAGAT CTGGATTTGCAGTACGGTGGTGAGAGCGAGGTGAAGCTGCAAATCACATATGTAGATGAGAAGATTAGGTTGGGGAAGGGATCCAGAGGTTCTTTATTTG TTTTCAAAAGAATCGGATAA
AA sequence Show only first row Show all	>Lus10026221 pacid=23156477 polypeptide=Lus10026221 locus=Lus10026221.g ID=Lus10026221.BGIv1.0 annot-version=v1.0 MAAAAASSFTLLPSAFKSSRTLSTVSSTSFNPVSVAYHKQRCSANLRIACSATVSSDPQLRTGEPDELVASILSKVKQTDGGVSLKREEHQLVAEVAQQL QGYCVSEPVKSPLIFGEWDVAYCSNPTSPGGGYRSAIGRLFFKTKEMVQALEAPDTVRNKIKFSLLGFLEGEVSLKGKLKALDGSWIQVTFEAPHFKVGD LDLQYGGESEVKLQITYVDEKIRLGKGSRGSLFVFKRIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	0	1
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	1.4	0.9588
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	2.0	0.9589
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	2.4	0.9517
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	2.6	0.9438
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	3.5	0.9511
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	5.7	0.9346
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	6.3	0.9453
AT3G61870			unknown protein		Lus10010112 [exp]	6.9	0.9439
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10023734 [exp]	7.7	0.9260
AT1G28140			unknown protein		Lus10034291 [exp]	7.7	0.9305

Compare expression of checked genes

Lus10026221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.