Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12730 63 / 1e-11 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT3G12660 61 / 4e-11 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G45470 56 / 2e-09 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G31370 51 / 7e-08 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G55730 45 / 1e-05 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G60900 40 / 0.0008 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042446 [exp] 252 / 5e-85 AT2G24450 105 / 7e-27 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10020158 [exp] 119 / 5e-33 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10026957 [exp] 116 / 5e-32 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10038004 [exp] 51 / 9e-08 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10009235 [exp] 51 / 1e-07 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10012344 [exp] 50 / 3e-07 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 50 / 3e-07 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 48 / 1e-06 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001752 [exp] 48 / 1e-06 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071700 [exp] 59 / 2e-10 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 58 / 4e-10 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 57 / 6e-10 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 57 / 7e-10 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.014G168100 [exp] 53 / 2e-08 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.001G367900 [exp] 50 / 2e-07 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.011G093500 [exp] 50 / 3e-07 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026223 pacid=23156419 polypeptide=Lus10026223 locus=Lus10026223.g ID=Lus10026223.BGIv1.0 annot-version=v1.0 ATGCAGGCAGTCTTGAGCCTCCACATCCTCCTCGACTACCTCGACGCTACGAAAATCCGTAACATGAAACGCAGCGTCACATTCACAACAATGTTCCAGG AAACAGGAATCGCCACCGGCAACCAAGGCTACGTTAACTTCACCAAGATGGGCGATAACGGCAACCAGATCATGATTGGTAATGGAAGGCGAGATGCTCA GTTATCCGTCAGTGTCGAAAGCCTGGTGATGACTAAGCCGCCGGTGCTTGCCCTTGTGGAAGTTAGCGGACTCATCAGTGCTCCTTGGGCTGACAACATT AAGGCTCCACCACCACGCTCCCACAAGAAGAAGAAGCTCGCCCCCACTCCGAGCCCTTCCGATGCGCCTTCGCCTTCTCATCGTCGCAGACACAGGAAAG TTGCTCCTTCGTCCGAAGCTGGCTCGCCTCCCGAGCCCGACGAAGACCCTGCCGATGCTGATGCTGATGCTGATTCCTCTGCTCCTGCCCCTGCCAAAAT ATCTGATTCCTCGTCGCCTTCTGTTGCTGGTGGATTTGCGGCTTCAGTGTTCATTGGATTGCTATATAGCCTCGTTAATGCTTAA
AA sequence Show only first row Show all	>Lus10026223 pacid=23156419 polypeptide=Lus10026223 locus=Lus10026223.g ID=Lus10026223.BGIv1.0 annot-version=v1.0 MQAVLSLHILLDYLDATKIRNMKRSVTFTTMFQETGIATGNQGYVNFTKMGDNGNQIMIGNGRRDAQLSVSVESLVMTKPPVLALVEVSGLISAPWADNI KAPPPRSHKKKKLAPTPSPSDAPSPSHRRRHRKVAPSSEAGSPPEPDEDPADADADADSSAPAPAKISDSSSPSVAGGFAASVFIGLLYSLVNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	0	1
					Lus10025402 [exp]	3.2	0.8649
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	3.5	0.8308
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10014301 [exp]	4.5	0.8644
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	8.7	0.8541
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	12.7	0.7944
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	13.5	0.8634
					Lus10034961 [exp]	15.9	0.7922
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	16.7	0.8303
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	21.5	0.8003
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	25.0	0.8320

Compare expression of checked genes

Lus10026223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.