Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 347 / 8e-118 unknown protein AT4G31440 285 / 1e-93 unknown protein AT2G14850 151 / 4e-43 unknown protein AT4G33890 140 / 1e-38 unknown protein AT5G67410 82 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042444 [exp] 712 / 0 AT2G24530 386 / 9e-133 unknown protein Lus10026942 [exp] 493 / 3e-175 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 492 / 6e-175 AT2G24530 346 / 4e-117 unknown protein Lus10011423 [exp] 164 / 4e-47 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 157 / 1e-44 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 146 / 7e-40 AT2G14850 278 / 5e-92 unknown protein Lus10002120 [exp] 56 / 1e-09 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005700 [exp] 466 / 3e-164 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 458 / 3e-161 AT2G24530 415 / 1e-143 unknown protein Potri.003G187400 [exp] 207 / 1e-63 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 204 / 1e-62 AT2G24530 236 / 2e-74 unknown protein Potri.009G090500 [exp] 179 / 4e-53 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 174 / 5e-51 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 161 / 4e-46 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 154 / 2e-43 AT4G33890 295 / 3e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026225 pacid=23156555 polypeptide=Lus10026225 locus=Lus10026225.g ID=Lus10026225.BGIv1.0 annot-version=v1.0 ATGCAGCCTCAGGAGAGCTCCAGAATCGATCTGGTCGAACTTAAAAGTCAGATAGTGAAGAAGATTGGGGCTGAGAGGTCAAAGAAGTATTTCTTTATCT TAAATAGGTTTATTAGTCAGAGACAAAGTAAGAGTGATTTCGATAAATCTTGTTTCCGCTTGCTTGGTAGGGAGAATCTCCCGTTACACAATCAGCTTAT TCGGGCGATTCTGAAGAATGCTTGCCTGGCAAAGGCTCCTCCGCCAACTCATGACGCGGATCCTGCACAATCCGCGATTCAGATGACAAAATGTTCTTCT GAAAGAGAAGATGTTCATGAACAGAGTGGAGCCCTTCTTCCCAAACACAGTCAAAATGTGCCAATTTGGTCCAACGGTGTTTTGCCTGTGTCCCCTCGGA GAATCAGGTCATGTATGCGTGATAAGAAGATTCGAGATAGGCCTAGCCCGCTTGGACCAAATGGAAAAGTTGATTGTGTTACAGACAATGGGGATTTTAG CCCATGTGATTTTCAGAGACCCTTGCAGCACCTTCAAGCAGTTGCTGAGCAGTCTGAGAATGAAAAGGCAGCATTGGTTCAACGGTCCATGGAAAATCCG AGGGCACAGAGGAAAGACCGGACCATGTTAGACCGAAGCCAGGTATTTCCACCACTTGGAATTCCATCTTGCTTAGCTAGCATTTCCGGGGCCCACAAAG CTAGACCCGTGACAAGTTCAGGTGAATTTGGCGCCTGCTACAATAGTGGTATCTTGTCTGATACAGAGATGTTGAAACAGCGTATGGAGCAGATTGCAGT TTCACAGGGCCTTGAAGGAGTTTCAATGGATTGTGCAAATATGTTGAATAACATGTTAGACATGTACTTGGGTAGGTTGATAAAGTCTTGTGTTGAACTG GCTCGGGCAAGAGCTCCTCATCATGATCAGAGAAAACAACCTGGCCTCAAACAACAGTTAACGGGAAAACTTGTCAATGGCGTATGGCCTAGCAGTCACT TGCTCATGCAGAATAGCAACGGATCCATGGAAGCTATGCAAGAACAAAAACCACGCTGTTCAATATCTTTGCTCGATTTCAAAGTAGCCATGGAAGCTAG GGAAGCTTTCAAGTAG
AA sequence Show only first row Show all	>Lus10026225 pacid=23156555 polypeptide=Lus10026225 locus=Lus10026225.g ID=Lus10026225.BGIv1.0 annot-version=v1.0 MQPQESSRIDLVELKSQIVKKIGAERSKKYFFILNRFISQRQSKSDFDKSCFRLLGRENLPLHNQLIRAILKNACLAKAPPPTHDADPAQSAIQMTKCSS EREDVHEQSGALLPKHSQNVPIWSNGVLPVSPRRIRSCMRDKKIRDRPSPLGPNGKVDCVTDNGDFSPCDFQRPLQHLQAVAEQSENEKAALVQRSMENP RAQRKDRTMLDRSQVFPPLGIPSCLASISGAHKARPVTSSGEFGACYNSGILSDTEMLKQRMEQIAVSQGLEGVSMDCANMLNNMLDMYLGRLIKSCVEL ARARAPHHDQRKQPGLKQQLTGKLVNGVWPSSHLLMQNSNGSMEAMQEQKPRCSISLLDFKVAMEAREAFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24530			unknown protein		Lus10026225 [exp]	0	1
AT5G07940			unknown protein		Lus10021621 [exp]	8.0	0.8570
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	10.2	0.7789
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	16.2	0.8039
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	19.9	0.7979
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	20.1	0.7921
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	22.0	0.8124
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	24.1	0.7859
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	26.5	0.7987
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10000653 [exp]	26.5	0.7898
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	28.0	0.7870

Compare expression of checked genes

Lus10026225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.