Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10650 146 / 3e-38 RING/U-box superfamily protein (.1.2) AT5G24870 118 / 3e-28 RING/U-box superfamily protein (.1.2) AT4G31450 73 / 1e-13 RING/U-box superfamily protein (.1) AT3G15070 57 / 2e-08 RING/U-box superfamily protein (.1.2) AT1G73760 55 / 6e-08 RING/U-box superfamily protein (.1) AT1G53190 55 / 7e-08 RING/U-box superfamily protein (.1.2) AT1G17970 54 / 9e-08 RING/U-box superfamily protein (.1) AT4G34040 54 / 2e-07 RING/U-box superfamily protein (.1) AT5G42940 52 / 5e-07 RING/U-box superfamily protein (.1) AT2G15530 52 / 7e-07 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042443 [exp] 748 / 0 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10020145 [exp] 384 / 5e-129 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10026941 [exp] 373 / 2e-124 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10024810 [exp] 62 / 5e-10 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10010372 [exp] 61 / 2e-09 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 52 / 6e-07 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10008874 [exp] 51 / 1e-06 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023507 [exp] 51 / 1e-06 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10023235 [exp] 51 / 1e-06 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274700 [exp] 269 / 8e-84 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 233 / 6e-70 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.007G045500 [exp] 59 / 6e-09 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 59 / 7e-09 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 57 / 2e-08 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 57 / 2e-08 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 56 / 4e-08 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.010G220700 [exp] 56 / 4e-08 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.012G053800 [exp] 52 / 4e-07 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 52 / 4e-07 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10026226 pacid=23156384 polypeptide=Lus10026226 locus=Lus10026226.g ID=Lus10026226.BGIv1.0 annot-version=v1.0 ATGGATAACTGCACTAGTAAGAGAAGAAACGATGGCATTTTTCTCTCTAGAAAAGGATCTTCACTTGCTCTACGGGATGCAACTGCCAGTAACAAAGATC AGAGTCCTCAATTTTGCACTCGGATCGGGTGTAGTAGCAGACTAAACTCTGCTAAAGCTACTCAAATCAACTATTCTGCTAAACCAAAGTTCTCCGGGCC ATCAATTCGTTCTTCTTCCTCAACTGGCAAGGAAACTGTTGCAAGTTCCTCTCGGGCTAATTTGGCAATTAGTAATACAAGGAAATCCTTCCCCAGCTCT GCCAAGAAGTTTCCTTCTCGCGGTGAATCAGATTCTTCAGAGAATGCTAGCGTTGTCGAAGATGAGCCTGATGTTCACAAAATTGATCCTCCCTCGAGAA AGCTTCATAAAGGCGATCATCAGTCCTGTTCTGAAACTATAAGTACACAGGTGCGGAGCACGAGTTTGGCATCGTGTACATTGTCCAACGGAGATTTTCA TCGCAAGTCAATGCTAGGGAATCCCAATACTCTAGCAAGCACTTCTTCTCCACTGTCTTTGAAAAACACAGTCCAAGGAAGATATTCAAATGTTGGCAGG AATGGTCTAAGAAATTTTAGGTGCAATTCAGTGGCGGATGCTGTCTCTTCAAGTTCATCATCATCTTTTTCGTCATCATCATCATCATCAGACTTGAACC TTAACAAACGAAAAGATCCATTGGAAAAAAGGGTGTTCAATGGAGAGAGCATTTCTTCTGCCAGAGGGAAAAAGACGTCTGGTTCATCTCTGGAAGGGCT GCAAAGTTCTACGAGTAGGGTATTCATCTCCGATGCTAGACGAGCCAGGATTGGCCCCACTATTAGGGATAATCCTGTCTCATCTGTTAGAACTCGGAGA TCGGTAACTGGTTATAGTTACAATAGGTCTCTAGGGACTAGAAACAATTTATCAGTAAGCGAGGTTGTCCCACAAGTTCCGGATCATGACATCAGTTTTG ATCTGAGTAGTTCTACTTCATCACATCAGTTGTTCGTGGAACCGTCTCTAGATTGCCCTTCACTTAGTCGAATTGGTAGCAGCGGTGGAAGAAGCTCTCG TGGTATTAGACGGCCATCGAGTCCTGCAGAAATCAACGATATGAGATCCTTACTAAACAGGGAGAGTTCCAGACGATACAACATGGATGGAATCGCCGAG GTGATGTTGGCACTTGAGGGGATTGGTCAAAATGAAGAGCTGACATATGAAGTGGGATCCATAGAGGGTGCATTTGAGAATCTTGGTACAGATACAGAGG ATACTAAATGCAGTATTTGCCAGGAAGAGTATGAAGAAGGCGATGAACTAGGAGGGCTAAAGTGCGAGCATAAGTATCACATGAAGTGCATACATCAATG GTTGAGGCTGAAGAACTGGTGCCCAGTTTGTAAGGCATCAGCAGTGCCCACCTTGTCTTCTGCTGCTGCTGCTGCTTCCTCGTCACTTTGA
AA sequence Show only first row Show all	>Lus10026226 pacid=23156384 polypeptide=Lus10026226 locus=Lus10026226.g ID=Lus10026226.BGIv1.0 annot-version=v1.0 MDNCTSKRRNDGIFLSRKGSSLALRDATASNKDQSPQFCTRIGCSSRLNSAKATQINYSAKPKFSGPSIRSSSSTGKETVASSSRANLAISNTRKSFPSS AKKFPSRGESDSSENASVVEDEPDVHKIDPPSRKLHKGDHQSCSETISTQVRSTSLASCTLSNGDFHRKSMLGNPNTLASTSSPLSLKNTVQGRYSNVGR NGLRNFRCNSVADAVSSSSSSSFSSSSSSSDLNLNKRKDPLEKRVFNGESISSARGKKTSGSSLEGLQSSTSRVFISDARRARIGPTIRDNPVSSVRTRR SVTGYSYNRSLGTRNNLSVSEVVPQVPDHDISFDLSSSTSSHQLFVEPSLDCPSLSRIGSSGGRSSRGIRRPSSPAEINDMRSLLNRESSRRYNMDGIAE VMLALEGIGQNEELTYEVGSIEGAFENLGTDTEDTKCSICQEEYEEGDELGGLKCEHKYHMKCIHQWLRLKNWCPVCKASAVPTLSSAAAAASSSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	0	1
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	1.4	0.9250
AT3G51130			unknown protein		Lus10014270 [exp]	4.7	0.8931
AT1G60995			unknown protein		Lus10014638 [exp]	5.8	0.9111
AT4G10930			unknown protein		Lus10023068 [exp]	5.9	0.9002
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	7.1	0.8937
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	7.3	0.9082
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	7.7	0.9068
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	7.7	0.8864
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	8.8	0.9003
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	9.0	0.8941

Compare expression of checked genes

Lus10026226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.