Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 61 / 2e-12 unknown protein AT4G02170 42 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042441 [exp] 246 / 4e-85 AT5G57510 64 / 9e-14 unknown protein Lus10028472 [exp] 66 / 5e-14 AT5G57510 87 / 1e-22 unknown protein Lus10033559 [exp] 57 / 6e-11 AT5G57510 84 / 1e-21 unknown protein Lus10009171 [exp] 52 / 9e-09 AT5G57510 88 / 6e-23 unknown protein Lus10017598 [exp] 49 / 8e-08 AT5G57510 80 / 6e-20 unknown protein Lus10020090 [exp] 40 / 0.0005 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273566 [exp] 90 / 9e-24 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 90 / 9e-24 AT5G57510 75 / 4e-18 unknown protein Potri.018G094100 [exp] 81 / 2e-20 AT5G57510 107 / 5e-31 unknown protein Potri.018G006800 [exp] 75 / 5e-18 AT5G57510 61 / 1e-12 unknown protein Potri.001G406600 [exp] 42 / 5e-05 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10026228 pacid=23156584 polypeptide=Lus10026228 locus=Lus10026228.g ID=Lus10026228.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGACGAACAAACAGAAGCAGCATTAGTACTCCTCCAGCTGGATGGAGTTTGCTGAGCCGCCTCAACAAGGCAGTGAAGAAGATCAATTTCC TTTTGAGTCTGAACATTCGACGATGGGAACTCAGTGACGCCATCAGGACGGCTGCTGTTAATCAGCGTCGAAAGAAGAAGCAAAAGCAGCAGCCAAAGCG CAGGTTTCTGAGCTTCAATGAGAAAGTAGGACTCCAAGGTTATGTTGAGTTATTGGAAGGTGATGATCATTATAATAACAGGCCATCATCCACCGGAGGA GGAGTACTGCTGGATAGAACGTGCAGTTTGACCGAGGAAGATGTCGACAAGCGAGCTGAGAAGTTCATAGCCAACTTCCGGCGTGACTTGTTGCTGCAGA GGCAGGTTTCCTTGAACCCGGCCTACTGCAGACTCGATAGTTTTGGATAA
AA sequence Show only first row Show all	>Lus10026228 pacid=23156584 polypeptide=Lus10026228 locus=Lus10026228.g ID=Lus10026228.BGIv1.0 annot-version=v1.0 MEKRRTNRSSISTPPAGWSLLSRLNKAVKKINFLLSLNIRRWELSDAIRTAAVNQRRKKKQKQQPKRRFLSFNEKVGLQGYVELLEGDDHYNNRPSSTGG GVLLDRTCSLTEEDVDKRAEKFIANFRRDLLLQRQVSLNPAYCRLDSFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57510			unknown protein		Lus10026228 [exp]	0	1
AT2G14095			unknown protein		Lus10010746 [exp]	3.0	0.9436
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	5.3	0.9510
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	6.9	0.9460
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	12.6	0.9412
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	12.6	0.9435
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	14.7	0.9341
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	17.1	0.9398
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	19.3	0.9383
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	20.5	0.9289
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	21.2	0.9291

Compare expression of checked genes

Lus10026228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.