Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 942 / 0 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 436 / 1e-144 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G03540 194 / 2e-54 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 181 / 7e-49 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G52350 168 / 2e-44 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 161 / 8e-42 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 147 / 6e-37 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G13990 140 / 1e-34 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT3G14090 137 / 8e-34 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 134 / 1e-32 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042439 [exp] 1220 / 0 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10037329 [exp] 575 / 0 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 206 / 3e-57 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 201 / 1e-55 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10014917 [exp] 200 / 6e-55 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10007751 [exp] 197 / 5e-54 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10035750 [exp] 181 / 9e-52 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10043432 [exp] 186 / 2e-50 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10018672 [exp] 183 / 7e-49 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272900 [exp] 1051 / 0 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 1029 / 0 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 685 / 0 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 669 / 0 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.014G015500 [exp] 205 / 8e-57 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.008G017800 [exp] 202 / 3e-56 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 198 / 9e-55 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.016G071000 [exp] 186 / 2e-50 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 182 / 5e-49 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.001G166400 [exp] 157 / 1e-40 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10026230 pacid=23156626 polypeptide=Lus10026230 locus=Lus10026230.g ID=Lus10026230.BGIv1.0 annot-version=v1.0 ATGGCGGAATGCCCGAGAAGCGACGAGAGTACGATTCAGAATCTGATATCCGCGAGAAAATCACTGAAGCTAAGCTTAGAGAAGTCTAAATCCTTGAACG TTGCCCTCGATAAAGCCGGGCCTAGACTCCACGAGATCAGTCAACGGTTGCCTTCTCTAGAAGCTTCCGTTCGCCCAATCCGTGCCGACAAAGACGCTCT CGTTGCCGTCGGAGGTCACATTAACCGCGCCGTTGGTCCTGCTGCAGCTGTGCTCAAGGTATTCGATGCGGTTCACGGCCTGGAGAAGTCCCTACTCTCA GATCCTCGCAATGATCTCCCTGGTTATTTATCCGTGCTTAAGCGTCTGGAAGAGGCGTTGAAGTTTCTCGGCGAAAATTGTGGACTGGCAATTCAGTGGT TGGAGGATATAGTTGAGTATTTGGAGGATAATTCCGTTGCCGACGACAAGTACCTGTCCAATCTGAAGAAGTCGTTGAAGAGTCTTAAGGAGTTGCAGAA GGATGGTGAAAGGTCTCGTCTTGACGGTGGACTGCTGGATGCTGCATTGGATAAACTGGAAGGAGAGTTTAGGCAGCTGTTGGTTGAACACAGTGTGCCA TTACCAATGTCGTCATCTCAGTCTCTTGGCGAACAAGCGGTTATTGCGCCCTCTCAGTTACCGGTTACGGTAATTCATAAGTTGCAAGCCATTCTCGGAA GGCTTATTGCGAATAACAGACTCGATGCTTGCATTTCTATATATGTAGAAGTCCGTAGCTCGAATGTGAGATCTAGCTTGCAGGCTCTTGATCTGGACTA TTTAGAAATTTCTATTGCTGAGTTCAACGATGTGCAGAGCATAGAGCGTTATATAGCCCAATGGGGGAAACATTTAGAGTTTGCAGTCAAGCATTTGTTT GAAGCGGAGTATAAGCTCTGCAATGATGTTTTTGAGAGGATAGGATTGGATGTGTGGATGGGTTGCTTTGCGAAAATAGCTGCTCAAGCGGGGATTCTCG CGTTCTTACAATTCGGGAAGACTGTTACGGAGAGTAAGAATGATCCAAACAAGCTTATTAAGCTTTTGGACATATTCGCGTCTCTCAATAAATTAAGACT GGATTTCAACAGGCTTTTCGGCGGTGCAGCATGTGTTGAGATCCAGAATCTGACTAGGGATCTTATAAAGAGTGTAGTTGATGGTGCGGCTGAGATATTT TGGGAACTTCTGGTTCAGGTGGAATTACAAAGGAAGATTCCTCCTCCTGCTGATGGAGGCGTTCCAATACCGGTGAGCTTTGTTACCGAGTATTGTAATA AGCTTCTAGGGAACGATTACAAGCCATTAGTGATCCATGTTCTGCATATCCACCGGAGTTGGAAGCATGAGAAGTTCCAGGATAAGCTGCTTATCAAGGA GATGTTGAAGTTGATCAAGGCTATTGAGGTGAATTTGGAAACATGGATGAAGGCTTATGAAGATACTATCTTATCCAACTTTTTTGCCATGAATAACCAC TATCATTTATACAAGCATCTGAAGGGGACTAAACTCGGAGAACTATTGGGTGATCCTTGGCTAAGAGAACACGAACAGTACAAGGACTACTATGCCGCGA TCTTTTTGAGAGATAGTTGGGGCAAGCTTCCTAGTCATCTGAGCCGGGAAGGGCTGATTCTTTTCTCTGGTGGGCGTGCCACTGCTCGAGATCTTGTGAA AAAAAGGCTAAAGACTTTCAATGAAGCTCTTGACGAAATGTATAACAAGCAATCACAGTGGGTAGTCCCGGACAGAGATTTGAGAGAGAAGACTAGCCAG ATGATTGTACAGACTGTTGTCCCGGTTTACAGAAGCTATATGCAGAACTACGGGCCTTTAGTTGAGCAAGAGGGAAGTTCAAGTAAGTATGCCAAGTACT CCGTGCAGTCATTGGAGCAGATGCTTGGTTCATTATTTCAGCCTAGACCTGGGAGATATGGAAGCTTTAAAGTTAGAAGGGCCAGCGACAAATTTGATAA TAATAGCCTTCATCGCACTGCCTCTGCCATTGTGTGA
AA sequence Show only first row Show all	>Lus10026230 pacid=23156626 polypeptide=Lus10026230 locus=Lus10026230.g ID=Lus10026230.BGIv1.0 annot-version=v1.0 MAECPRSDESTIQNLISARKSLKLSLEKSKSLNVALDKAGPRLHEISQRLPSLEASVRPIRADKDALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLS DPRNDLPGYLSVLKRLEEALKFLGENCGLAIQWLEDIVEYLEDNSVADDKYLSNLKKSLKSLKELQKDGERSRLDGGLLDAALDKLEGEFRQLLVEHSVP LPMSSSQSLGEQAVIAPSQLPVTVIHKLQAILGRLIANNRLDACISIYVEVRSSNVRSSLQALDLDYLEISIAEFNDVQSIERYIAQWGKHLEFAVKHLF EAEYKLCNDVFERIGLDVWMGCFAKIAAQAGILAFLQFGKTVTESKNDPNKLIKLLDIFASLNKLRLDFNRLFGGAACVEIQNLTRDLIKSVVDGAAEIF WELLVQVELQRKIPPPADGGVPIPVSFVTEYCNKLLGNDYKPLVIHVLHIHRSWKHEKFQDKLLIKEMLKLIKAIEVNLETWMKAYEDTILSNFFAMNNH YHLYKHLKGTKLGELLGDPWLREHEQYKDYYAAIFLRDSWGKLPSHLSREGLILFSGGRATARDLVKKRLKTFNEALDEMYNKQSQWVVPDRDLREKTSQ MIVQTVVPVYRSYMQNYGPLVEQEGSSSKYAKYSVQSLEQMLGSLFQPRPGRYGSFKVRRASDKFDNNSLHRTASAIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10026230 [exp]	0	1
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	2.6	0.8663
AT4G02720			unknown protein		Lus10022052 [exp]	4.0	0.8617
AT5G40880			WD-40 repeat family protein / ...		Lus10014612 [exp]	4.5	0.8325
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	5.5	0.8503
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	5.7	0.8374
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	6.0	0.8540
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	8.7	0.8572
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	12.1	0.8420
AT4G02720			unknown protein		Lus10042601 [exp]	12.4	0.8316
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	12.8	0.8271

Compare expression of checked genes

Lus10026230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.