Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24580 488 / 4e-172 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042437 [exp] 735 / 0 AT2G24580 540 / 0.0 FAD-dependent oxidoreductase family protein (.1) Lus10020132 [exp] 505 / 6e-179 AT2G24580 501 / 6e-178 FAD-dependent oxidoreductase family protein (.1) Lus10026933 [exp] 0 / 1 AT2G24580 153 / 6e-43 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008700 [exp] 542 / 0 AT2G24580 569 / 0.0 FAD-dependent oxidoreductase family protein (.1) Potri.006G272800 [exp] 516 / 0 AT2G24580 585 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10026231 pacid=23156488 polypeptide=Lus10026231 locus=Lus10026231.g ID=Lus10026231.BGIv1.0 annot-version=v1.0 ATGGCAACAGATACGACACTCAAATCATCCAAACACCACAAACAATATCTCAAACTTTCCGCCGGGATGGACCAATTCGACACAATAGTCGTCGGAGCCG GCATCATGGGCAGCGCCACCGCATACCAGCTAGCCAAGAGAGGCCAGAAGGTAATTCTGCTTGAACAATTCGATTTCCTCCACCACCGTGGCTCATCACA CGGCGAGTCCCGCACTATCAGAGCCACTTACCCGGAGGATTACTACTGCGCCATGGCCATCGAGTCTTCCCGCCTGTGGGAGGAGGCCGAGTCGGAAATC GGGTACAAGGTCTACTTCAAAGCCCCTCAATTCGACCTGGGACCTTCCGACAACAAAAGCCTCCTCGGCATCGTCTCCAGCTGCAGGAACCGATCCGTCA GCTGCCGGGTGCTTGACCACCGCCTGGTGGAGGAGGAATTCGCCTGCCGGATCAAGATACCGGAGAATTGGATCGGGGTTTGCACGGAGATGGGCGGGAT TCTGAAACCGACAAAGGCCGTCGCGATGATGCAAACGCTCGCCTTCCGAAACGGCGCCGTTTTGAGAGACCGCACGGAAGTGAGAGGAATCGTTAAGGAC GAGGTCAGAGGCGGAGTACAGGTGTTGATCGGTGGCGAGGAGGAGGAGGAGGAGGAGATGATTTGGGGGAAGAAGTGCGTAGTGACTGCCGGAGCTTGGA CGAAGAAATTAGTTGAAAGGGTTAGCGGGATCGAGCTGCCGATCCAACTAGTTGAAACGACGGTGTGTTACTGGAGAGTGAAAGAAGGGCACGAAGGTAA ATTCGCTATGGGAGAAGGGGTATTCCCGACATTTGCGAACTACGGGAGACCGTACATATACGGGACGCCGTCGCTGGAGTATCCGGGTCTAGTGAAAGTA GCGGTTCACGGCGGGTACCCGTGCGACCCGGACAAGAGGGCGTGGGGGCCGGTGAAATCGGAGGAAGAATTGAAGGAGTGGATCGAGAAGAGGTTCGGAG GTGCAGTGGTGACGGAAGGAGGGCCTGTGGTGAAGCAGTCGTGTATGTATTCGATGACTCCCGACGAGGATTATGTACTCGATTTCGTCGGAGGGGAGTT TGGGAAAGATGTAATCGTGGGAGGTGGGTTTTCGGGTCACGGGTTTAAGATGGGTCCTGTGGTGGGGAAGATTCTTGCTGATCTTGCTGTCCATGGGGAA TCGAAAGGGTTTGTGGAGGAAGGGATTCCTAATGTGTTTAGGATAAGTAGATTCGAAGGGAACCCGTTTGGGAATGTGAAGGATTTCCAGGTGAATGATT GTATTTCTTGA
AA sequence Show only first row Show all	>Lus10026231 pacid=23156488 polypeptide=Lus10026231 locus=Lus10026231.g ID=Lus10026231.BGIv1.0 annot-version=v1.0 MATDTTLKSSKHHKQYLKLSAGMDQFDTIVVGAGIMGSATAYQLAKRGQKVILLEQFDFLHHRGSSHGESRTIRATYPEDYYCAMAIESSRLWEEAESEI GYKVYFKAPQFDLGPSDNKSLLGIVSSCRNRSVSCRVLDHRLVEEEFACRIKIPENWIGVCTEMGGILKPTKAVAMMQTLAFRNGAVLRDRTEVRGIVKD EVRGGVQVLIGGEEEEEEEMIWGKKCVVTAGAWTKKLVERVSGIELPIQLVETTVCYWRVKEGHEGKFAMGEGVFPTFANYGRPYIYGTPSLEYPGLVKV AVHGGYPCDPDKRAWGPVKSEEELKEWIEKRFGGAVVTEGGPVVKQSCMYSMTPDEDYVLDFVGGEFGKDVIVGGGFSGHGFKMGPVVGKILADLAVHGE SKGFVEEGIPNVFRISRFEGNPFGNVKDFQVNDCIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	0	1
AT4G03600			unknown protein		Lus10039834 [exp]	3.9	0.8500
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	5.7	0.8260
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	10.6	0.8370
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	11.1	0.8380
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	12.0	0.8311
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	14.1	0.8264
AT1G16080			unknown protein		Lus10024094 [exp]	15.7	0.8460
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	15.7	0.8370
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	19.4	0.7962
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	19.5	0.7998

Compare expression of checked genes

Lus10026231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.