Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 90 / 2e-23 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 66 / 2e-14 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT1G62980 45 / 5e-06 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT4G01630 44 / 1e-05 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT3G29030 42 / 7e-05 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G20750 42 / 7e-05 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT5G56320 40 / 0.0002 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G15370 39 / 0.0007 ATHEXPALPHA1.24, ATEXP12, ATEXPA12 expansin 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042435 [exp] 214 / 3e-72 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10019978 [exp] 84 / 4e-21 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026931 [exp] 79 / 3e-18 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10030078 [exp] 69 / 8e-15 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10020130 [exp] 67 / 7e-14 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10031759 [exp] 64 / 3e-13 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10026930 [exp] 64 / 1e-12 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10020131 [exp] 60 / 1e-11 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1) Lus10013118 [exp] 60 / 1e-11 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 115 / 2e-33 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 113 / 2e-32 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 90 / 2e-23 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 87 / 3e-22 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G179300 [exp] 83 / 9e-21 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 67 / 9e-15 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 66 / 2e-14 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 61 / 2e-12 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 60 / 9e-12 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 52 / 8e-09 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026232 pacid=23156591 polypeptide=Lus10026232 locus=Lus10026232.g ID=Lus10026232.BGIv1.0 annot-version=v1.0 ATGGCACACCGATGGCAGCCGTCGGCCACCGNNTTCGCCCACCGTTTTAGTGGTGGTCGTGATTTCAAATTATCAAAAGAAGGTAGAGATTTCGGAGGAA CAACCGATGATTTGAGAATTTTAATCAAAATTGTCCTTCTATTTCTGTGTGCACCATCGGCTTGCTACGGGTACGACGCGCAGGACGGGATGACGGCAGC AGCAAGTGAAACGCACCTTTGGAAAGGCGGACGTGCTTGCGGGAAGCGTTATAAAGTGAAATGCTTAAGCGGGACCAACCAAGGAGTTGCGGTGCCTTGC AAGAAAGGCAAGACTGTTACGGTGAAGATCATCGACCTATGTCCTGCCGTCGGCTGCAAGGCTACCATTGACTTGTCTCAGAAAGCCTTTGCCCACATCG CTGACCCTGACGAGGGAATCATCAACATCTCCTACCAAGAGTACGTCTCGAGCTCTCATAATAACTACTACAAAAAGAATGTAGTTTTAGAGGTGGTAAT TAATTATGTGACTGTTTAA
AA sequence Show only first row Show all	>Lus10026232 pacid=23156591 polypeptide=Lus10026232 locus=Lus10026232.g ID=Lus10026232.BGIv1.0 annot-version=v1.0 MAHRWQPSATXFAHRFSGGRDFKLSKEGRDFGGTTDDLRILIKIVLLFLCAPSACYGYDAQDGMTAAASETHLWKGGRACGKRYKVKCLSGTNQGVAVPC KKGKTVTVKIIDLCPAVGCKATIDLSQKAFAHIADPDEGIINISYQEYVSSSHNNYYKKNVVLEVVINYVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.1	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	5.3	1.0000
					Lus10011605 [exp]	5.9	1.0000
					Lus10025268 [exp]	7.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	7.2	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	8.8	1.0000
AT2G24960			unknown protein		Lus10042715 [exp]	12.0	0.9619
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	12.4	0.9530
					Lus10024141 [exp]	12.5	1.0000
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10007678 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10026232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.