Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 885 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 838 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 778 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 758 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 694 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 656 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30560 654 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 652 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 646 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G01340 643 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042434 [exp] 1386 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 961 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 954 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10019983 [exp] 880 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10015510 [exp] 879 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 865 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10002363 [exp] 756 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039486 [exp] 755 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039415 [exp] 754 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 890 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 875 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 768 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 747 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 708 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 666 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 644 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 635 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 631 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 631 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026233 pacid=23156545 polypeptide=Lus10026233 locus=Lus10026233.g ID=Lus10026233.BGIv1.0 annot-version=v1.0 ATGATGGGTTCTTCGTTTTTTTACAGTTTCTTAAACCCCCATGGAGAGGAAAAGGCGTCGTCTTTGACATCTTGCCCGTGGTTGAAAGCTGAAAAAAGTG GCCTTGACGAAAGGGATTCCTTAACTACACGAAAATACTCCAAATTTGGAAAATTCAGATTGTTCCTGGAGATTAACCAGCATGTGTCTTGGAAGAATGG AATTGTCGATCCTGGAAGTGACGTGTTCCTCCAGTGGAACAGGGTTTTCCTCTTCTCTTGCTTGGTGGCACTTTTTATCGATCCGTTGTTCTTCTACGTC CCCACCATCGTCCAGTCCGAGGGTTCGACCTGTATGGCGATTGACTTGAACCTGGGAATCACTGTCACTTGTTTGAGAACTATTGCGGATGCTTTCTATG GAATGCATATAGTTTTCAAATTCAGGACAGCTTATGTTTCTCCCAGTTCAAGAGTTTTCGGCAAGGGGGAACTCGTTATGGATCGTAACTTGATCGCCGT GAGATACTTGAGATCTGATTTCTTCATTGATTTCATTGCAGCATTGCCCCTTCCTCAGATTATGATATGGGTTGTGATTCCAGTGATAAAAACTGTGCAG TCAGATTACACCAACAACGCCCTAGTTCTGGTGGTTCTGCTGCAGTACATTCCAAGACTATATCTGATTTTCCCACTAAGTGCAGAGATAAGCAACGCCG CTGGAGTTATGACCAAAACTGCTTGGGCTGGTGCTGCATACAACCTTGTCTTATACATGTTGGCCAGCCATGTGGTGGGTTCTGCTTGGTATTTGTGTTC AATTGAGCGCTATGCAACGTGCTGGAAATCCGTGTGCGAGCAGGATTTGGGCAACCACCAAACACACTGCAAATCTTCCTACTTGATTTGTAACAATCTT GAGAAACCTGACCGGAAGGTGTGGGCAGAGGTTACTAGGGTGTTCAGCAAGTGTGATCCCAACAACGATTCCGACCCGACTGTAGTTGATTACGGGATGT TCGCTGATGCTTTGTCGAAGCAGGTTGCTTCTGCAACCTTCATTGAGAAGTACTTTTATTGCCTGTGGTGGGGCTTGCAGCACTTGAGTTCCTATTGCCA GAGTGCAACCACAACCACGTTTGTTGGAGAGACATTGTTTGCCATACTAATAGCAATCATGGGTCTTGTGCTCTTTGCACATTTGATTGGAAACATGCAG ACATACTTGCAATCCATAACTGCAAGACTGGAAGAATGGAGGCTCAAGAGAAGGGATACTGAAGAGTGGATGGGACATCGCCAACTCTCTGGAAACCTTC GAGATCGTGTCAGGCGATATGTTCAGTACAAGTGGCTTGCGACTCGTGGTGTTGACGAGGAAGGAATCTTGCGCCAACTGCCTGCTGATCTTCGTCGAGA CATTCAACGCCACCTCTGTTTAGACCTTGTTCGACGTGTTCCTTTCTTCTCACAAATGGATGACCTGCTACTAGACGCCATATGCGAACGCTTGACGTCC ATGTTGATCACTCAAGGGACAAACATTGTTCGAGAAGGCGACCCGGTAAGTGAGATGCTATTCATAATCAGAGGGAGGCTAGAGAGCTCCACAACAGATG GTGGGAGGTCAGGTTTCTTCAACTCAATTCCATTAAGGCCAGGAGATTTCTGCGGCGAGGAGCTGCTTGCTTGGGCATTGGTTCCGAACTCGAGTTCGAA TCTGCCATCCTCAACTAGAACAGTGAGAGCGGTGGAAGAGGTAGAAGCGTTTGCATTACGTGCAGAAGATCTCAAGTTTGTTGCCAACCAGTTCAGACGC CTCCACAGTAAGAAGCTGCAGCACACGTTCCGGTTATATTCGCACCATTGGAGGACATGGGCCGCATGCTTCATTCAATCTACATGGCGTAGATTCAAGA GGAGGAGGATGGCCAAAACGTTGAGCATGGCAGAGTCGTTCATGTCTTGTTTTACTCTGGATTATGATGAAACAAGAGAAGATCAAGAGACTAGTGCTGC TCCATCTAGTAGTTCATCAGAACCAACTCAACAGAATTTGATGGTTAAGAGGTTTGCTAAGCGATTTGTTGCTAACGCCAGAAGAGGAACTCTTAAGATG AAGGATGTTGAAATGCCTAAGTTGATCAAGCCCGATGAGCCAGATTTCTCCATTGATGCGAGTGACGATGAGAAATGA
AA sequence Show only first row Show all	>Lus10026233 pacid=23156545 polypeptide=Lus10026233 locus=Lus10026233.g ID=Lus10026233.BGIv1.0 annot-version=v1.0 MMGSSFFYSFLNPHGEEKASSLTSCPWLKAEKSGLDERDSLTTRKYSKFGKFRLFLEINQHVSWKNGIVDPGSDVFLQWNRVFLFSCLVALFIDPLFFYV PTIVQSEGSTCMAIDLNLGITVTCLRTIADAFYGMHIVFKFRTAYVSPSSRVFGKGELVMDRNLIAVRYLRSDFFIDFIAALPLPQIMIWVVIPVIKTVQ SDYTNNALVLVVLLQYIPRLYLIFPLSAEISNAAGVMTKTAWAGAAYNLVLYMLASHVVGSAWYLCSIERYATCWKSVCEQDLGNHQTHCKSSYLICNNL EKPDRKVWAEVTRVFSKCDPNNDSDPTVVDYGMFADALSKQVASATFIEKYFYCLWWGLQHLSSYCQSATTTTFVGETLFAILIAIMGLVLFAHLIGNMQ TYLQSITARLEEWRLKRRDTEEWMGHRQLSGNLRDRVRRYVQYKWLATRGVDEEGILRQLPADLRRDIQRHLCLDLVRRVPFFSQMDDLLLDAICERLTS MLITQGTNIVREGDPVSEMLFIIRGRLESSTTDGGRSGFFNSIPLRPGDFCGEELLAWALVPNSSSNLPSSTRTVRAVEEVEAFALRAEDLKFVANQFRR LHSKKLQHTFRLYSHHWRTWAACFIQSTWRRFKRRRMAKTLSMAESFMSCFTLDYDETREDQETSAAPSSSSSEPTQQNLMVKRFAKRFVANARRGTLKM KDVEMPKLIKPDEPDFSIDASDDEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	6.1	0.8202
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	9.2	0.7839
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	10.2	0.7867
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	15.5	0.7654
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	16.2	0.7835
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	16.6	0.7719
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	16.7	0.7747
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	16.8	0.6864
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	21.9	0.7683
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	22.2	0.7433

Compare expression of checked genes

Lus10026233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.