Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26680 152 / 2e-39 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24700 142 / 5e-37 B3 REM10 Transcriptional factor B3 family protein (.1) AT4G00260 137 / 2e-35 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT4G31680 118 / 5e-29 B3 REM8 Transcriptional factor B3 family protein (.1) AT4G31640 115 / 1e-28 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31615 115 / 7e-28 B3 Transcriptional factor B3 family protein (.1) AT4G31690 115 / 8e-28 B3 REM9 Transcriptional factor B3 family protein (.1) AT2G24645 109 / 7e-26 Transcriptional factor B3 family protein (.1) AT5G32460 108 / 2e-25 Transcriptional factor B3 family protein (.1) AT4G31650 102 / 2e-23 B3 REM6 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026264 [exp] 259 / 6e-82 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1) Lus10026265 [exp] 250 / 9e-79 AT4G31650 154 / 6e-41 Transcriptional factor B3 family protein (.1) Lus10042406 [exp] 159 / 8e-45 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10026921 [exp] 130 / 9e-34 AT1G26680 90 / 2e-19 transcriptional factor B3 family protein (.1) Lus10039303 [exp] 77 / 1e-14 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 69 / 1e-12 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 66 / 1e-11 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 56 / 1e-08 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026724 [exp] 52 / 3e-07 AT4G33280 42 / 2e-04 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036800 [exp] 72 / 2e-13 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 56 / 4e-08 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 53 / 2e-07 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 52 / 5e-07 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.012G093200 [exp] 51 / 8e-07 AT3G18960 62 / 2e-11 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 50 / 2e-06 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 49 / 5e-06 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 47 / 2e-05 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 47 / 3e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 44 / 0.0001 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026234 pacid=23156395 polypeptide=Lus10026234 locus=Lus10026234.g ID=Lus10026234.BGIv1.0 annot-version=v1.0 ATGAACTCAACTTTCAAAGAGGAAGCTGGATTTGTCCATACGGGAAAACCCTTCCTGTGTGGTAACTATACAGAGAAGGTTGCATTCAAATCCCGTGGCA ATAGAACGGGGAAGGGAGAGGAAAAGGAAGATGGAAATGGAGATTATGAAGGAGCCAAGTTTCCTTATCAAGATAACAAGCCGCTATCTAGAATCACTGA ACAGTCGATCCCAGTTGAATTTTCCAAGTACTTGGAAGGAAGAGAAGTCGGTTGTGAAGATGCTGTGATGAGAAGCCCTGGTGGTAAATTATATAGGGTG AAGATGAACGGAAGGAAGTTTGAAGCTGGGTGGAAGGAGTTCGTTGGAGAGCACGATTTGCATGTTGGTGATTTCCTTGTATTTAGACTTGTTGATGCAG GGAAAGTGTTCGACGTAATGGTGTTTGATCCGAGTGCTTGTGAGAGGCAATATCCGTCGAGTAAAGTTGATTTGAAGGAAGAAGAGCTAAACGAAGAACT ACCATCGCCGTGTCCTGATTTTGCAGACTCGGAAACAAGACATGATCCCACAGATTCGGAGACACCCATGAAAAGGATGGAAATTGGGGAAGATGGTGCT TCAGGGCCAGTGTACCCCTCCTTTGTGGTATCTGTAACGCCTGACAAACTTGAAAGAGGCAGACTGAAAGTCCCAGGGAAATTTGCAAAGATACATGGCC TGGAAGTTAAGAACACTGAGGCGGTTGTTTACAATGAAGAAGGTATACCATGGCCTGTAAGGATTAATTGCTACAGCTACTCCTCTCGCTTCACTTATCT CGAGCGAGGTTGGATGGATTTCCAAAGGGAAAATGGGCTGAAGCTAGGGGATACCTTCAATCTTGAGCTTCTTCATGGTGGTGAAAAGCCGGTGCTTAGA GTGTCTGGACTGCATTCAAATCCAACACTCGAAAAGCAGTACAGAGAGAAGGTAAAAATGAAGGTTATGAAGAAGTCACTAGCTTCCGGATTTCCAAATA GCGTGTCCTACCATTTCTTTGTCGGTGTAACTATTCCTCATCTACAAGGAGCTACACTGAGCATTCCAAAGGAGTTGGCTCAATACAGTGGTCTATCTGG TGAATGTCCGACTATGATCCTTTCAAATGGAAATGGAGGTCATTGGCCGGTGAGGATCCATAAAAGAAAGACCGGCCATGTTTATATTGGACGTGGTTGG ACTGAACTGGTGAAAGACAACAACTTAAGTGCAGGAGATCTCCTGAGGATGGAACTTGTCGAAAGAGGATTGAGCCCCATGATAATGTTCAAGGTAGTCT CGAGGATCAAAATTGTTCCTAAGCAAGAAGAGGACTAA
AA sequence Show only first row Show all	>Lus10026234 pacid=23156395 polypeptide=Lus10026234 locus=Lus10026234.g ID=Lus10026234.BGIv1.0 annot-version=v1.0 MNSTFKEEAGFVHTGKPFLCGNYTEKVAFKSRGNRTGKGEEKEDGNGDYEGAKFPYQDNKPLSRITEQSIPVEFSKYLEGREVGCEDAVMRSPGGKLYRV KMNGRKFEAGWKEFVGEHDLHVGDFLVFRLVDAGKVFDVMVFDPSACERQYPSSKVDLKEEELNEELPSPCPDFADSETRHDPTDSETPMKRMEIGEDGA SGPVYPSFVVSVTPDKLERGRLKVPGKFAKIHGLEVKNTEAVVYNEEGIPWPVRINCYSYSSRFTYLERGWMDFQRENGLKLGDTFNLELLHGGEKPVLR VSGLHSNPTLEKQYREKVKMKVMKKSLASGFPNSVSYHFFVGVTIPHLQGATLSIPKELAQYSGLSGECPTMILSNGNGGHWPVRIHKRKTGHVYIGRGW TELVKDNNLSAGDLLRMELVERGLSPMIMFKVVSRIKIVPKQEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	0	1
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	4.2	0.8313
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10004226 [exp]	9.6	0.7977
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	14.8	0.8101
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016890 [exp]	14.8	0.8403
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	15.0	0.8590
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	23.7	0.8509
AT3G14470			NB-ARC domain-containing disea...		Lus10028279 [exp]	25.0	0.8444
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	40.9	0.7934
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	47.1	0.8014
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	50.9	0.7960

Compare expression of checked genes

Lus10026234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.