Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 896 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 874 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 861 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G27100 841 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24720 829 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 806 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 750 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 706 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11180 705 / 0 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT1G42540 533 / 9e-175 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003436 [exp] 1139 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 1081 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 1027 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 726 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10035980 [exp] 522 / 6e-170 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10039671 [exp] 521 / 2e-169 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 518 / 2e-168 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039672 [exp] 484 / 3e-156 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10012245 [exp] 484 / 1e-155 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012100 [exp] 1190 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 1160 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 1155 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 1140 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G270400 [exp] 1083 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.018G013000 [exp] 1082 / 0 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 1079 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 1077 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268700 [exp] 1059 / 0 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G011500 [exp] 1058 / 0 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10026235 pacid=23156620 polypeptide=Lus10026235 locus=Lus10026235.g ID=Lus10026235.BGIv1.0 annot-version=v1.0 ATGGCGGGGGGGGTTTGGGGGCGGCCCCCCTCATCTTTTTTAGATCTTTGCTTGTGGTTCTTCATCGCCATGACAGCTACTATTACGTCCGTCGTGGCAC AGAGTGGCGGTAACTCGACGGTGGTTGCGGTGAACGTCGGGGTGATTCTGGACTTGAACAGGAGCAACTTCGTGGGACAGGTGGGGCTGAGCTGCGTGCA AATGGCGATCTCCGATTTCTACGCTGCTCACCCTAACTACACCACCCGGATCACCATCAACACCAGGGATTCCGGCGGAGATGTCGTTACTGCGGCTGCT TCAGCTCTGGATTTGATAAAGAACAAGCAAGTGGAAGCAATATTAGGACCAGAAACATCAATGCAGGCCAATTTCATCATAGGCATGGGGGAAAAGGCTC GAGTCCCCGTCATCTCATTCTCTGCTTCAAGTCCAACCCTTGCTTCCACCCACAATCCCTATTTTTTACGTGCTACACCCAAGGACTCAACTCAAGTCGC CGCCATTGCCGCCATTGTCAAGGCCTTTGGTTGGAGACAAGCTGTACCAATCTACACTGACAACGAATACGGAGAGGGTGTCATCCCTTACTTGATCGAC GCCTTAGGGGAAGTCGATGCTCGTGTCCCATACCGCAGCAAGATCTCCCCATCCGCGACAGACGATCAAATAGGCCAGGAGCTCTACAAGCTTATGACCA TGCAAACTAGAGTCTTCGTCGTACACATGCCGCCCCGTCTTGGGGCTAGGCTCTTCGCCAAGGCCAAAGAGATTGGAATGATGACATCAGGTTACGTCTG GATCGTAACGGATGGAATCACCAATTTCTTTCCCTCCATGGACCGTTCTGGCCTCAACTTGATGCAGGGCGTTCTGGGTGTCAAACCTTACGTGCAGCTG ACGAAACAAGTGGTCGATTTTCGGGTTAGGTGGAAGAGGAAATTCCAGCAAGAACATCCGGAGATTCTGGATTTTGACCTCAACAATTATGGGTTGTGGG CGTATGATGCTACAGTGGCATTAGCCATGGCAGTTGAAAATACTTATAATGCTACTAATCCAAACTTGGGTTTTGCAAATGGCAATGTTTCAAGCAATGG TTCTTCTTCTTCAACGACGGACCTTGGAAACTTCGGAGTGTCGAGAAACGGTCCAGATCTTGTCGAGAAGTTATCAAGAACAAGCTTCCAAGGACTATCA GGTGAGTTTGTATTCAGTAATGGGGAGTTGAGAGATTCAGCTTACCAAATAGTGAATGTGAACGGTAATGGAGCAAGAGGGATTGGGTTCTGGAGCAGTG AAAATGGGCTCACAAAAGAAATACTGAAATCAACCAGTACGGCACTACCAACTAAGGGAAGCCTTGGAACAGTGATATGGCCAGGGGATCCAGATTCTGT TCCCAAAGGGTTTGAGATCCCAACAAATGGGAAGAAGCTGAGAATAGGAGTGCCTGTGAAAACTGGTTTCAACGAGTTCGTTTCCATCACAACCGATTCG GCCACTAACGAGACAACTGTGGCCGGATACTCCATCAACATTTTCGAAGCTGTTGTCCAAGCATTGCCTTATGCTCTCCCCTTTGAGTATGTGCCTTTTG CCACCGCGAATGGAGAGAGTGCTGGAACTTACAACGATCTGGTTTATCAGGTCTTCCTAGGGAAATTCGACGGCGTGGTAGCAGACACCACCATCATTGC CAACAGATCACTGTACATCGACTTCACATTGCCGTACACAGAATCAGGAGTATCAATGATAGCACCAATCAAACCAATCCGAAACAAGAACGCTTGGGTA TTCCTGAAACCACTGACGTGGGATCTTTGGGTGACGACGTTTCTCTTCTTCATTTTCATCGGGTTCGTGGTCTGGGTTTTGGAGCATAGAATCAACAAGG ATTTCAGAGGACCTCCGTCCCATCAGGCCGGAACTAGCTTATGGTTCTCCTTCTCGGCCATGGTCTTCGCTCACAGAGAGACAGTGGTGAGCAACTTGGC GAGGACGGTAGTGATCATATGGTGTTTTGTCGTGCTGATTTTGACGCAGAGTTACACGGCGAGTTTCACTAGCCTCTTAACAGTGCAGCAGCTCCAACCC ACCGTAACGGACATAAATGAACTGCTGAGGAAAGGGGATTTCGTTGGGTATCAGGATGGGTCGTTTGTGTTGGGTCTCCTTAAGCGATTAGGATTCCCCG AAGAGAAGCTTGTGCCTTATAAAAACTCTGATGACTGTGACTTGCTTTTCACCGAAGGAAGAATTGCTGCCGCATTCGACGAAGTGCCTTACATCAAGCT CTTCTTAGCTAAGCACTGCTCCAAGTACACCACCGTCGACCCTACTTATAAGACTGACGGCTTTGGCTTCGTTTTCCCCAAAGGATCGCCGTTAGTTGCT GACATTTCCAGGGCAGTTCTGAACGTAACAGAGGGGGACAAGATGAGCAAATTTGAGAAAGCATGGTTTGGTAAAAATAGCAGATGCCCAGAATCAAGTT CCTCGGTTTCTCCAGGGAGCCAGCTGGGGCTAAACAGCTTCTGGAGCTTGTTCCTAATAGCTGGAGTTGCTGCAGTTTCAGCACTCTTCATCTTTACCGT CACGTTTGTTTACCAACACAGGAATTATCTGCAGTTACCCCAGGAGGATAATTCAAATCTTTCATTATGGAGAAGGACTCTGAATCTTTTGAAGATATTT GACAAAAAAGATCTCCAAAGCCATACTTTCAGGGAGGAGAGAAATGGCGGGGAGGTTCATCTTTCGGATTTGAATGTGTTAAGCCCTTCCGCATACTCGG TTCAGACCGAGTTTCCTCAGGGGGATTCTTCTTCCTCGGAGTTGCATGACATTAACACAGCTGTTCAAGAAGTCGTTATAAATATTGACGATCCACATCC GAATGGTGATGGTGAAGCACAGGTTGCTACTACAGATGAAGGAGTAACAAGGCCACAGGCAACCTGA
AA sequence Show only first row Show all	>Lus10026235 pacid=23156620 polypeptide=Lus10026235 locus=Lus10026235.g ID=Lus10026235.BGIv1.0 annot-version=v1.0 MAGGVWGRPPSSFLDLCLWFFIAMTATITSVVAQSGGNSTVVAVNVGVILDLNRSNFVGQVGLSCVQMAISDFYAAHPNYTTRITINTRDSGGDVVTAAA SALDLIKNKQVEAILGPETSMQANFIIGMGEKARVPVISFSASSPTLASTHNPYFLRATPKDSTQVAAIAAIVKAFGWRQAVPIYTDNEYGEGVIPYLID ALGEVDARVPYRSKISPSATDDQIGQELYKLMTMQTRVFVVHMPPRLGARLFAKAKEIGMMTSGYVWIVTDGITNFFPSMDRSGLNLMQGVLGVKPYVQL TKQVVDFRVRWKRKFQQEHPEILDFDLNNYGLWAYDATVALAMAVENTYNATNPNLGFANGNVSSNGSSSSTTDLGNFGVSRNGPDLVEKLSRTSFQGLS GEFVFSNGELRDSAYQIVNVNGNGARGIGFWSSENGLTKEILKSTSTALPTKGSLGTVIWPGDPDSVPKGFEIPTNGKKLRIGVPVKTGFNEFVSITTDS ATNETTVAGYSINIFEAVVQALPYALPFEYVPFATANGESAGTYNDLVYQVFLGKFDGVVADTTIIANRSLYIDFTLPYTESGVSMIAPIKPIRNKNAWV FLKPLTWDLWVTTFLFFIFIGFVVWVLEHRINKDFRGPPSHQAGTSLWFSFSAMVFAHRETVVSNLARTVVIIWCFVVLILTQSYTASFTSLLTVQQLQP TVTDINELLRKGDFVGYQDGSFVLGLLKRLGFPEEKLVPYKNSDDCDLLFTEGRIAAAFDEVPYIKLFLAKHCSKYTTVDPTYKTDGFGFVFPKGSPLVA DISRAVLNVTEGDKMSKFEKAWFGKNSRCPESSSSVSPGSQLGLNSFWSLFLIAGVAAVSALFIFTVTFVYQHRNYLQLPQEDNSNLSLWRRTLNLLKIF DKKDLQSHTFREERNGGEVHLSDLNVLSPSAYSVQTEFPQGDSSSSELHDINTAVQEVVINIDDPHPNGDGEAQVATTDEGVTRPQAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	0	1
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	1.7	0.9421
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	3.5	0.9390
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	9.2	0.9035
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	9.6	0.9189
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	13.2	0.9112
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	13.4	0.9029
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	14.3	0.9219
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	18.0	0.8924
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	19.2	0.9066
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	22.2	0.9163

Compare expression of checked genes

Lus10026235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.