Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 210 / 2e-61 HXXXD-type acyl-transferase family protein (.1) AT1G24420 180 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT5G47950 177 / 1e-49 HXXXD-type acyl-transferase family protein (.1) AT1G24430 174 / 4e-48 HXXXD-type acyl-transferase family protein (.1) AT3G30280 171 / 6e-47 HXXXD-type acyl-transferase family protein (.1) AT4G15390 167 / 1e-45 HXXXD-type acyl-transferase family protein (.1) AT5G47980 165 / 6e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23970 144 / 1e-37 HXXXD-type acyl-transferase family protein (.1) AT4G15400 140 / 6e-36 HXXXD-type acyl-transferase family protein (.1) AT5G48930 106 / 3e-24 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026237 [exp] 662 / 0 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 466 / 5e-160 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 386 / 4e-128 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 375 / 3e-124 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 370 / 3e-122 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 335 / 5e-111 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 219 / 1e-64 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 213 / 3e-62 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 186 / 5e-51 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 243 / 1e-73 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 225 / 5e-67 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 211 / 1e-61 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 210 / 1e-61 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 208 / 1e-60 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 201 / 4e-58 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 199 / 6e-57 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 198 / 6e-57 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 195 / 1e-55 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 195 / 1e-55 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026236 pacid=23156505 polypeptide=Lus10026236 locus=Lus10026236.g ID=Lus10026236.BGIv1.0 annot-version=v1.0 ATGGCAAAGGCTTACCATATGTCTAACAGATCATGTACGTTATTCCATAGGAGCATTTGTTCAGCCGCGGCAACTGAATTAGTAGTCAAGGTAACATCAA AATCATTCATCAAACCTTCCTCTCCAACCCCTCCCAAACTTCGAAATTTCAATCTCTCTATACTCGACCAGTTTTTCGCAAATGCACCGATTTATCCTAC GTTCGTCTTCTTTTATCCTCCCATCGTTACATCGGTGGGCGCCGGAAGTACTCCACTGCTATTGCGGGACTCGTTCTCCGAAACCCTGTCTCACTTCTAC CCATTCGCCGGTAGGATTAACTTCATCAACGAAGAAGTTGGTACTGGTATCTCAACCATCAACTGCAACGACCTAGGAGCCGAGTATCTAGAAGCGGAGG CAAACCAAGAAATGTCACACTTTCTTAGTACTTCCCCTGCCCCAAATACTCGCTGTCTGGCTCCCCCGCGACCGCAACAGTTAATCGACACGCCTCTTGC GTGCGTGCAGACCACAGTGTTCCGTTGCGGCGGAATTGCTGTGGGAGTTTCCTTAAACCACCTCATCACGGATGGTCATGTTTTTAGCACCTTAATCAAT CGTTGGGCTGCCATTGCCAGGGGAGTTTCCACAAACGATATGCGTGTGTGCGCTCACGACATGGCCTCTTGGTTGTTTCCAATAAATGACGCTGTTTTGA GTAAGCCGTTGGCTTTGCCGCCACCGACGTTGGATTCATCGAATAAAGTTGTAATGCCGGTTACCGTTTTACAGAGATTCGTCTTCAAACCTGAGGAAAT ATCAGCCTTGAAATCCAGAGTCAAAAGCAGTCAAGTCCCCAATCCAAGTCGAACTTTGGCCATCTTTGGGCTTATCTGGAAGGCTGTAATAAAAGCTTAC ACATCAGCATCATCAGGTCAAGGTGAAACGAAGTCGTCGTCTACTGTACTTTTACCAGTCAACCTCCGACCCAGATTCAAGACATGTTTGCCTGACTACT CTATCGGAAATCTTTTGTTTCCGGCAAAGGCATGTCAAGGAGACATCCTGGTTGAAACGCCGTCGTCGTCCCATGATGATAATGATGAGCTAAAGCGGTT GACGTATGAGCTGAAGAGATCCATAGACAAAGTGGATACTGAATTTGTGGAGAATCTGAAAGGTGAGAAAGGACACAAGGTATTTCGTAAGCAGCTGGAG GCAAGAGGACACAGAAAAGATTACTTATTCTCAAGTGGGATAAGGATTGGGCTCAATGAAGCTGACTTCGGAATGGGGAAACCCATTTGGGTTAGCTTCC TAGGCGTAACAGATATTCCCTGGCCGGATACTGCTGTGTTGCTGGAAGCCACACCTAGTGATGACACGGTAGAAGCATGTGTGAGCTTGACTGAGAAAGA GATGGCCTTCTTTCAACGAGATCCTGAACTGCTGCAATATGCCACCGTCAATCCAAGAAGATTTGTTTTCAAAGCTAGTGAAATATCAGAATTGAAATCC GTAGTCAAGAGCAATGAAGTGCCCCACCCAAGCCGGACAGTCGCCATCTTTGCTCTTATATGGAAGATTGCTACCAAAGCATCAATATTCCCGACCCGGA CGTCTTCTGCTGCACTTGCTTTAGTCAATCTCCGACCCAGATTCAAGAAGCCACTACCGCACTACTCTATTGGCAACATTTGGTGGACCGAAGTCTCGCA TTATGATGAAACGACAACCGAAGATGACGTTCAACTTCAGAGGCTGGCGTTTCAATTAGGACAATCCATTGAGGAAGTGATGCAGAGTTCATTGAGAATT TGA
AA sequence Show only first row Show all	>Lus10026236 pacid=23156505 polypeptide=Lus10026236 locus=Lus10026236.g ID=Lus10026236.BGIv1.0 annot-version=v1.0 MAKAYHMSNRSCTLFHRSICSAAATELVVKVTSKSFIKPSSPTPPKLRNFNLSILDQFFANAPIYPTFVFFYPPIVTSVGAGSTPLLLRDSFSETLSHFY PFAGRINFINEEVGTGISTINCNDLGAEYLEAEANQEMSHFLSTSPAPNTRCLAPPRPQQLIDTPLACVQTTVFRCGGIAVGVSLNHLITDGHVFSTLIN RWAAIARGVSTNDMRVCAHDMASWLFPINDAVLSKPLALPPPTLDSSNKVVMPVTVLQRFVFKPEEISALKSRVKSSQVPNPSRTLAIFGLIWKAVIKAY TSASSGQGETKSSSTVLLPVNLRPRFKTCLPDYSIGNLLFPAKACQGDILVETPSSSHDDNDELKRLTYELKRSIDKVDTEFVENLKGEKGHKVFRKQLE ARGHRKDYLFSSGIRIGLNEADFGMGKPIWVSFLGVTDIPWPDTAVLLEATPSDDTVEACVSLTEKEMAFFQRDPELLQYATVNPRRFVFKASEISELKS VVKSNEVPHPSRTVAIFALIWKIATKASIFPTRTSSAALALVNLRPRFKKPLPHYSIGNIWWTEVSHYDETTTEDDVQLQRLAFQLGQSIEEVMQSSLRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	1.4	0.8622
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028508 [exp]	6.2	0.8129
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	6.7	0.7811
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	11.8	0.7407
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10042214 [exp]	21.1	0.7596
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	27.7	0.7122
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	27.9	0.7084
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10023887 [exp]	28.2	0.6408
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	35.1	0.7441
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Lus10020477 [exp]	38.6	0.6759

Compare expression of checked genes

Lus10026236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.