Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 214 / 5e-64 HXXXD-type acyl-transferase family protein (.1) AT5G47980 177 / 8e-50 HXXXD-type acyl-transferase family protein (.1) AT1G24420 176 / 8e-50 HXXXD-type acyl-transferase family protein (.1) AT1G24430 174 / 9e-49 HXXXD-type acyl-transferase family protein (.1) AT4G15390 168 / 1e-46 HXXXD-type acyl-transferase family protein (.1) AT5G47950 163 / 6e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23970 161 / 4e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 159 / 2e-43 HXXXD-type acyl-transferase family protein (.1) AT4G15400 149 / 6e-40 HXXXD-type acyl-transferase family protein (.1) AT5G48930 106 / 1e-24 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026236 [exp] 662 / 0 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 520 / 0 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 398 / 5e-137 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 399 / 9e-135 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 393 / 2e-132 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 359 / 5e-119 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 221 / 1e-66 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 221 / 3e-66 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 206 / 7e-59 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 249 / 3e-77 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 232 / 1e-70 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 219 / 1e-65 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 219 / 1e-65 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 214 / 5e-64 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 214 / 1e-63 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 213 / 1e-63 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 211 / 1e-62 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 211 / 1e-62 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 209 / 4e-62 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026237 pacid=23156530 polypeptide=Lus10026237 locus=Lus10026237.g ID=Lus10026237.BGIv1.0 annot-version=v1.0 ATGAATCGAATTAGCAAGGTATTCATTGCAAACGCCTACCAGCTGCAGGCATTGTCCAGATGCATGATACGTAGGAGCATTTGTTCAGCCGCAGCAGCAG AAGCTGATGAATTACAAGTGAAGGTAACCTCAAAATCATTCATCAAACCTTCCTCCCCAACCCATCCCAGCCTCAGAAATTTCAATCTCTCTCTACTCGA CCAGTTTTTCCCTAATGCACCAATTTACCCTACCTTCGTCTTCTTTTATTCTCCCATCGTCGATACAGCGGTGGGAGCCGGAAGTAGTACTCCACGGCTA TTGCGGGACTCGTTCTCCAAAACCCTGTCTCGCTTCTACCCATTCGCCGGTAGGATTAAATTCATCAAAGAAGGTGGTACTAGTATCTCAACCGTCAACT GCAACGACCTAGGAGCTGAGTATTTAGAAGCCGAGGCAAACCAAGAAATGATTCACTTTCTTAGTAGCTCTCCGCCGAATACTCAGCTGCTGCGTCGTTT GGCTCCTCCACGACCACAAGTACTGTCCCTGGACATGCCTCTTGCGTGCGTGCAGATTACATTGTTTCGTTGTGGTGGGATCTCGGTGGGAGTTTCCTTA AATCATATCATCGCCGATGGTCATGTTTTTAGCATGTTAGTCAATCATTGGGCTTCCGTTGCCAGAGGAGCTGTTTCCTTAAACGACACGCATGTGTGCG CACACGACATGGCTGCTTCGTTATTTCCAATAAACGACGCCGTTTTGAACAGTAAGCCGTTGTTTTGGCTGAAACCGATGGAACTTTCAAGTGAGGTTGA AATGCCAGTTTCCATTTTAAAGAGATTCGTTTTCAAAGCTGATGAAATATCAGCTTTGAAATCCAGAGTCAAAAGTAGTCAAGTCCCCAACCCAAGTCGA ACTGTGGCCATATTTGGGCTTATATGGAAGGCTGCAACGAAAGCTTACGAATCAATATCATCGGGTCAAAGGAAAACGATGCCGACTAGTGCGCTTTCAC TAGTCGGCCTCCGACCCAGATTGAAGACCCAATTGCCAGACTACTCTATTGGAAACCTTTTATGGTCCACCGAGGCACGTCAGGAAGACATAGCGTCGTC GTCATCGTCCATGAATGATAATAATGATGAACTAAAACGGTTGACGTATGAGCTGAAGAGATCCATAGAAAAAGTGGATACTGAATTTGCAGAAAATTTG AAAGGTGAGAAAGGGCACAATGAAGTTCGCAAGTTCCTGGAAGCGAGAGGACTCGGCGGCAAAGATTACTTCTTTTCAAGTGTGTTAAGGTCTGGGTTGA ACAGAGTTGACTTCGGAAGGGGGAAGCCCATTTGGGTTAGCTTTATAGGCCCAACAGATTTTCCCGTCCCAGATTCTGTTGTGTTGGTGGAAGCTACATC CAGTGATGATGGCACGGTGGAAGCCTGGGTGAGCTTGACAGAGAAAGAGATGGCCATCTTTGAACGGGATCCTCAACTGCTTCAATACGCCATTGTTAAT CCGAGAGTTCTATGA
AA sequence Show only first row Show all	>Lus10026237 pacid=23156530 polypeptide=Lus10026237 locus=Lus10026237.g ID=Lus10026237.BGIv1.0 annot-version=v1.0 MNRISKVFIANAYQLQALSRCMIRRSICSAAAAEADELQVKVTSKSFIKPSSPTHPSLRNFNLSLLDQFFPNAPIYPTFVFFYSPIVDTAVGAGSSTPRL LRDSFSKTLSRFYPFAGRIKFIKEGGTSISTVNCNDLGAEYLEAEANQEMIHFLSSSPPNTQLLRRLAPPRPQVLSLDMPLACVQITLFRCGGISVGVSL NHIIADGHVFSMLVNHWASVARGAVSLNDTHVCAHDMAASLFPINDAVLNSKPLFWLKPMELSSEVEMPVSILKRFVFKADEISALKSRVKSSQVPNPSR TVAIFGLIWKAATKAYESISSGQRKTMPTSALSLVGLRPRLKTQLPDYSIGNLLWSTEARQEDIASSSSSMNDNNDELKRLTYELKRSIEKVDTEFAENL KGEKGHNEVRKFLEARGLGGKDYFFSSVLRSGLNRVDFGRGKPIWVSFIGPTDFPVPDSVVLVEATSSDDGTVEAWVSLTEKEMAIFERDPQLLQYAIVN PRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	1.0	0.9405
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	2.0	0.9090
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	2.2	0.8953
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	2.4	0.8938
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	2.4	0.8983
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	2.8	0.8541
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	3.5	0.8970
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	3.7	0.8656
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	9.2	0.7915
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	9.5	0.8062

Compare expression of checked genes

Lus10026237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.