Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24930 150 / 1e-42 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 119 / 1e-31 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 114 / 1e-29 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT3G02380 114 / 1e-29 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 112 / 8e-29 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 101 / 1e-24 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT1G73870 71 / 1e-13 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G68520 65 / 1e-11 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 64 / 1e-11 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT1G25440 64 / 2e-11 CO COL16 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042431 [exp] 328 / 2e-114 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026909 [exp] 218 / 2e-69 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 202 / 4e-63 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10031016 [exp] 110 / 1e-30 ND 47 / 1e-07 Lus10037636 [exp] 87 / 2e-20 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10015619 [exp] 90 / 3e-20 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10005106 [exp] 86 / 7e-19 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10024655 [exp] 61 / 1e-10 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10039695 [exp] 61 / 2e-10 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267700 [exp] 200 / 1e-62 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 200 / 2e-62 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.018G096084 [exp] 137 / 4e-38 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G173600 [exp] 119 / 2e-31 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.017G107500 [exp] 118 / 8e-31 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 115 / 9e-30 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.015G054600 [exp] 68 / 1e-12 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 65 / 8e-12 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.008G120400 [exp] 65 / 8e-12 AT1G25440 314 / 2e-103 B-box type zinc finger protein with CCT domain (.1) Potri.001G339200 [exp] 63 / 3e-11 AT5G14370 174 / 5e-52 CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10026238 pacid=23156391 polypeptide=Lus10026238 locus=Lus10026238.g ID=Lus10026238.BGIv1.0 annot-version=v1.0 ATGAATCATCCCATCACCACGTCACCTGCAAGGCCGACGCAGCCGCCCTCTGCGTCTCCTGCGACCGCGATATCCACTCCGCCAACCCCCTCGCCCGCCG CCACGACCCCCCCGTCTCGCACCCCCCACACCCGCCCCGCCGCAAACAACAACAACAACAACAACAAGGCTGGCTCTACTACTATGGATCTGAACACCGG CCAGTTCTTGTTCCACGTGATGGATCCGAGCTATCTGGATCTGGAGTATGTGGATCCGAAGATGGAAGCCCAGGAGCATAACAGTTCGGGAGCCGACGGA GTAGTCCCGGAGCAGATCGACGAGGCCGGCGGCGGTCATCATCATCAGTCTCCGGTGCTCATGAACGACGACCACTGCTTCGATCCCGATTTCTCTGCCG CCGTTGACGAATCCAAAGGTTTCCCCTACGGTTACCACCACGCTCATCAGGGCTTGAGCCACAGCTTATCGTCTTCGTCGATGGACGTGGGAGTGGTCCC AGAAGGCAGCGTTATGACGGACATATCGAATTCGTACAGCAGAGGAGTTGGAGGGATGGCGATTGGGGGTGAATCGGCGGCAGCGGCGGGGAGCCAGACG ACGGTGCCGCTATCGGCGGTGGAGAGGGAGGCGAGAGTGCTGCGTTACAGGGAGAAGAGGAAGAGCCGGAAGTTCGAGAAGACGATAAGGTACGCATCGA GGAAAGCTTATGCGGAGACGAGGCCAAGAATCAAAGGGAGGTTCACCAAGCGTACGGATGCTGACGTGGAAGCGGATCGGAGCATGTACGGATTCGGGGT AGTTCCGTCCTTCTAA
AA sequence Show only first row Show all	>Lus10026238 pacid=23156391 polypeptide=Lus10026238 locus=Lus10026238.g ID=Lus10026238.BGIv1.0 annot-version=v1.0 MNHPITTSPARPTQPPSASPATAISTPPTPSPAATTPPSRTPHTRPAANNNNNNNKAGSTTMDLNTGQFLFHVMDPSYLDLEYVDPKMEAQEHNSSGADG VVPEQIDEAGGGHHHQSPVLMNDDHCFDPDFSAAVDESKGFPYGYHHAHQGLSHSLSSSSMDVGVVPEGSVMTDISNSYSRGVGGMAIGGESAAAAGSQT TVPLSAVEREARVLRYREKRKSRKFEKTIRYASRKAYAETRPRIKGRFTKRTDADVEADRSMYGFGVVPSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	0	1
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	1.0	0.9543
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	1.4	0.9504
AT5G55570			unknown protein		Lus10008950 [exp]	2.0	0.9469
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	2.4	0.9472
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	3.2	0.9459
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	4.9	0.9422
AT4G27310	CO		B-box type zinc finger family ...		Lus10033751 [exp]	5.8	0.8893
AT3G47070			unknown protein		Lus10040689 [exp]	6.3	0.9294
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	6.5	0.9357
AT3G47070			unknown protein		Lus10018216 [exp]	7.7	0.9243

Compare expression of checked genes

Lus10026238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.