Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36700 471 / 2e-168 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4) AT5G36790 471 / 2e-168 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT5G47760 350 / 2e-121 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042429 [exp] 547 / 0 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10039102 [exp] 367 / 1e-127 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1) Lus10038761 [exp] 333 / 6e-115 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1) Lus10033024 [exp] 233 / 2e-76 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1) Lus10038760 [exp] 226 / 4e-74 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180400 [exp] 491 / 1e-175 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.008G077400 [exp] 487 / 3e-174 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.016G004200 [exp] 376 / 2e-131 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1) Potri.006G003501 [exp] 74 / 1e-16 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026241 pacid=23156543 polypeptide=Lus10026241 locus=Lus10026241.g ID=Lus10026241.BGIv1.0 annot-version=v1.0 ATGGAGAGTTTCAAGACTAGAGCAGCATCCTCAGTACCGGCTCCGCAATTGGACAACGCCGACGCACTCATCGACTCCGTCGAGACCTTCATCTTCGACT GTGACGGAGTTATATGGAAAGGAGATAAGCTGATCGAGGGAGTTCCTGAGACGCTTGACATGCTCCGATCCAGAGGGAAGAGATTAGTATTTGTGACCAA TAACTCTACCAAGTCAAGGAAGCAGTACGGTAAAAAGTTCGAGAGTTTAGGTCTCACCGTCAGCGAGGAAGAGATTTTTGCGTCCTCCTTCGCTGCTGCT GCTTACTTAAAGTCCATTGATTTTCCCAAAGATAAGAAGGTTTATGTAATTGGTGAGGAAGGGATCTTGAAGGAGCTGGAGCTTGCTGGAATTCAGTACC TTGGTGGCCCTGGGGACGGTGACAAGAAGATTGAGCTGAAGCCAGGGTATCTACTGGAGCATGACAAAGATGTTGGAGCTGTGGTGGTTGGATTCGACCG TTATTTCAACTACTACAAAGTCCAGTATGGAACTCTTTGCATAAGGGAAAATCCTGGATGCCTCTTCATCGCCACGAATCGTGATGCCGTCACTCACCTC ACAGATGCTCAGGAATGGGCAGGGGGTGGTTCTATGGTTGGTGCTGTTCTAGGATCAACTAAAAAGGAGCCATTGGTTGTGGGAAAGCCCTCTACTTTCA TGATGGATTACTTGGCAAACGAGTTCGGGATAACCAAGTCCCAGATATGCATGGTAGGGGACAGATTGGACACCGATATTCTTTTCGGACAGAACGGTGG TTGTAAAACTCTGCTTGTACTCTCAGGTGTAACCTCATTGTCAATGCTGCAAAGCCCCAGCAACTCCATCCAGCCAGATTTCTACACTAACAAGATATCC GACTTTCTTTCTCTGAAAGCTGCACGTGTATGA
AA sequence Show only first row Show all	>Lus10026241 pacid=23156543 polypeptide=Lus10026241 locus=Lus10026241.g ID=Lus10026241.BGIv1.0 annot-version=v1.0 MESFKTRAASSVPAPQLDNADALIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSRGKRLVFVTNNSTKSRKQYGKKFESLGLTVSEEEIFASSFAAA AYLKSIDFPKDKKVYVIGEEGILKELELAGIQYLGGPGDGDKKIELKPGYLLEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHL TDAQEWAGGGSMVGAVLGSTKKEPLVVGKPSTFMMDYLANEFGITKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPSNSIQPDFYTNKIS DFLSLKAARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	0	1
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	1.7	0.9783
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	2.8	0.9713
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	4.2	0.9599
AT4G01150			unknown protein		Lus10010132 [exp]	4.5	0.9597
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	4.9	0.9712
AT3G47070			unknown protein		Lus10005866 [exp]	5.3	0.9656
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	5.3	0.9682
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	6.0	0.9588
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	6.3	0.9676
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013725 [exp]	6.6	0.9588

Compare expression of checked genes

Lus10026241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.