Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 267 / 1e-84 Eukaryotic aspartyl protease family protein (.1) AT5G10760 234 / 4e-72 Eukaryotic aspartyl protease family protein (.1) AT1G79720 152 / 3e-41 Eukaryotic aspartyl protease family protein (.1) AT1G01300 127 / 3e-32 Eukaryotic aspartyl protease family protein (.1) AT3G61820 127 / 3e-32 Eukaryotic aspartyl protease family protein (.1) AT3G18490 122 / 3e-30 Eukaryotic aspartyl protease family protein (.1) AT1G25510 120 / 7e-30 Eukaryotic aspartyl protease family protein (.1) AT3G20015 120 / 8e-30 Eukaryotic aspartyl protease family protein (.1) AT5G33340 119 / 1e-29 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G31450 119 / 3e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042427 [exp] 506 / 3e-177 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 400 / 2e-136 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 323 / 2e-106 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 157 / 7e-43 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 140 / 3e-37 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 124 / 3e-31 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 124 / 4e-31 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 123 / 1e-30 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039126 [exp] 118 / 1e-30 AT1G01300 139 / 2e-38 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015100 [exp] 309 / 9e-101 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 258 / 3e-81 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 251 / 7e-79 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 251 / 8e-79 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 248 / 1e-77 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 208 / 4e-62 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 207 / 6e-62 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 189 / 3e-55 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 162 / 4e-45 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 159 / 8e-43 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10026243 pacid=23156611 polypeptide=Lus10026243 locus=Lus10026243.g ID=Lus10026243.BGIv1.0 annot-version=v1.0 ATGGCAATTGCTTCTACTACTACTACTTCCCTCTTCTCCTTCACCACCATCCTCCTCCTAGCTCTAATTACCTTCTTTTCTCTCACCATCAATGGCGATG CCAATGTTGCAGAGCAGCATAGTTTCCACACCATTCAGCTCTCCTCTCTGTTCCCATCTCAATCTTGCTCTCCCGCCGGCCCTTCTTTTTCAACCAAAGG GTTGAAGAACGAGGCATCTCTGCTAGAAGTGGTTCACAAACACGGGCCATGCGCGCAAGCCCAACAAGACAAACCCAGCCCAGACGAAATCCTTCTCCAG GACCAGTCCAGGGTTAAGTCAATCCAGTTCAGGTCCAGAAAAGCCTCCAGGAGCGACGTCGGCGTCACCAAATCCACCACCATCCCCGCCAAGGACGGCA GTCTCGTTGGCGCCGGCGACTACATCGTCACCGTCGGTCTGGGCACTCCGGTCAGGAAACTATCTTTGGTCATGGACACTGGGACGGATCTGACGTGGAC TCAGTGCAAACCTTGCGTGAAATCATGCTACAAACAAAAGGAAAAGATGTTCGAACCCTCGCAGTCCACTTCTTACCAATACGTCTCCTGCGAGCGCGCC GCTTGCTCCGCCCTTGCTTCCGCCACCGGATTTAGGGATTGTTCATCGTCGACATGCGTGTACCAGGTCAAATACGGAGACTCGTCATTCTCAAAAGGCT TCTTCGCTTCAGAGAAACTCACCTTGACACCAGCTGACGGCATTGACGACTTCAACTTCGGATGCGGCCAGAACAACCAAGGGAAAGACTTCGCCGGTGC CGCCGGATTGCTGGGCTTGGGCAGAAACTCAATATCCCTCGTCAGTCAAACCGCCGACAAATACAACAAGCTCTTCTCCTACTGCCTCCCTTCCACCGCC TCCTCTACCGGCTACCCCCTCTTCTGCACCACCGCCTCTTCCACCAAATCCCCCATCGTCTACACTCCAATCACCGGAGATGCCAACACCTACGGCCTGG GAATCACCGCCATCAGCGTCGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCGGTGGAGGTGGTTTACGACGTTGCCGGGGGGAGGATTGGGTTTGCTAGCGGTGGTTGCAGCTGA
AA sequence Show only first row Show all	>Lus10026243 pacid=23156611 polypeptide=Lus10026243 locus=Lus10026243.g ID=Lus10026243.BGIv1.0 annot-version=v1.0 MAIASTTTTSLFSFTTILLLALITFFSLTINGDANVAEQHSFHTIQLSSLFPSQSCSPAGPSFSTKGLKNEASLLEVVHKHGPCAQAQQDKPSPDEILLQ DQSRVKSIQFRSRKASRSDVGVTKSTTIPAKDGSLVGAGDYIVTVGLGTPVRKLSLVMDTGTDLTWTQCKPCVKSCYKQKEKMFEPSQSTSYQYVSCERA ACSALASATGFRDCSSSTCVYQVKYGDSSFSKGFFASEKLTLTPADGIDDFNFGCGQNNQGKDFAGAAGLLGLGRNSISLVSQTADKYNKLFSYCLPSTA SSTGYPLFCTTASSTKSPIVYTPITGDANTYGLGITAISVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXVEVVYDVAGGRIGFASGGCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	0	1
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	1.7	0.8608
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	3.5	0.8502
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	4.2	0.8198
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	17.2	0.8458
AT3G61700			Plant protein 1589 of unknown ...		Lus10039340 [exp]	18.7	0.7418
					Lus10037277 [exp]	19.8	0.8167
					Lus10041470 [exp]	20.7	0.7283
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	21.7	0.7072
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	22.6	0.8322
					Lus10039628 [exp]	23.9	0.7896

Compare expression of checked genes

Lus10026243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.