Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 303 / 6e-98 Eukaryotic aspartyl protease family protein (.1) AT5G10760 229 / 2e-69 Eukaryotic aspartyl protease family protein (.1) AT1G79720 153 / 5e-41 Eukaryotic aspartyl protease family protein (.1) AT3G18490 125 / 5e-31 Eukaryotic aspartyl protease family protein (.1) AT1G01300 124 / 7e-31 Eukaryotic aspartyl protease family protein (.1) AT3G61820 124 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT3G20015 119 / 5e-29 Eukaryotic aspartyl protease family protein (.1) AT1G25510 119 / 7e-29 Eukaryotic aspartyl protease family protein (.1) AT2G03200 118 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT5G33340 113 / 5e-27 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042426 [exp] 421 / 1e-143 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 324 / 8e-107 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 322 / 2e-104 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 177 / 1e-49 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 166 / 5e-46 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 143 / 2e-37 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10039126 [exp] 135 / 6e-37 AT1G01300 139 / 2e-38 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 120 / 8e-30 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10020279 [exp] 117 / 1e-28 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015100 [exp] 293 / 6e-94 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 253 / 8e-79 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 224 / 2e-67 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 217 / 4e-65 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 217 / 4e-65 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 206 / 1e-60 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 204 / 5e-60 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 179 / 1e-50 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 176 / 2e-48 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 169 / 6e-47 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10026244 pacid=23156536 polypeptide=Lus10026244 locus=Lus10026244.g ID=Lus10026244.BGIv1.0 annot-version=v1.0 ATGAAGTCCTTCGCCAGGACAAATCCAGGGTTGAGTCGAAAAGCCGCTGGGAATGACGTCAGTGTCACGGAATCCACCACCATTCCCGCCAAGGACGGCA CCACCGTTGGCTCCGGCAACTACATCGTCACCGTCGGGCTGGGCACTCCGGCCAAACAACTATCTCTGATATTCGACACTGGGAGCTACCTGACGTGGAC TCAGTGCCAACCATGCTTCCCACACTGCTACCATCAACGGGAGAAGATCTTCGAACCCTCCCAGTCCACTTCTTATCGAAACGTTTCCTGCAAGCAAGCC GTTTGCGCCGCCCTTTCTTCCGCCACCGGTACGTTTCGCCTCTCCCATTCTTTTCTGAGTCCCATTCTGGATCCAGAAATTGCTGCAGGGTTGAAAAACG AGGCATCTCTGCTGCAAGTGGTTCACAAGCATGGGCCATGCGCTCAGGCCCAAATGCTTACCCCTCAACAACACAAACCCAGCCCAGATGAAATCCTTCG CCTGGACAAATCCAGGGTTGAGTCAATCCACTCCAAGACGAGAAAAGCCGCTGGGAATGACGTCAGTGTCACGGACTCCACCACCATTCCCGCCAAGGAC GGCACCACCGTTGGCTCCGGCAACTACATCGTCACCGTCGGGCTGGGCACTCCGGCCAAACAACTATCTCTGATATTCGACACCGGGAGCGACGTGACGT GGACTCAGTGCCAACCTTGCGTCAGAGCATGCTACCAGCAACAGGAGAGGATCTTCGAACCCTCCCAGTCCACTTCTTATCGAAACGTTTCCTGCGAGCA AGCCGTTTGCGCCGCCCTTTCTTCCGCCACCGGTACGTTTCGCCTCTCCCATTCTTTTCTCAGTCCCATTCTGGATCCAGGAAACAATGGGGGATGTTCA TCCTCGACATGCGTATACGGAATCCAATACGGAGACTCTTCATTCTCAGTAGGATTCTTCGCCTCGGAGAAACTCACCTTGAACTCAACCGACGTGTTCG ACGAATTCTACTTTGGATGCGGCAAAAACAACCAAGGAAATTTCGGCGGCGCCGCCGGATTGATCGGCTTGGGAAGAGACAAACTATCCCTAGTCTCTCA AACCTCCGACAAATACAACAAGCTCTTCTCCTACTGCCTACCGCCTCCTCTCCTTGAAGGAATAGCCAACTATCCTCGGTGGAAAACAGCCATGGAGCAT TTCATCAGGACATCATCAGCTGACGGTGAGGAACTGTGGCGCATGATCAGTCAAGGTGTGGATGGTGACGACAACAGAAATGTGCAGCTCAACGCGCAGA CGACGCACATCGTTCACTGTAGACTGGAATTCAGCCTTCCTACAAGCTTATATCCTGCAAAACTGCTGAACGGATGTGGGCAAGGATTCAAAATCTACAC AAATATTTCACACCTTCATCATCCAGATGCCTTGGGAGAGTAG
AA sequence Show only first row Show all	>Lus10026244 pacid=23156536 polypeptide=Lus10026244 locus=Lus10026244.g ID=Lus10026244.BGIv1.0 annot-version=v1.0 MKSFARTNPGLSRKAAGNDVSVTESTTIPAKDGTTVGSGNYIVTVGLGTPAKQLSLIFDTGSYLTWTQCQPCFPHCYHQREKIFEPSQSTSYRNVSCKQA VCAALSSATGTFRLSHSFLSPILDPEIAAGLKNEASLLQVVHKHGPCAQAQMLTPQQHKPSPDEILRLDKSRVESIHSKTRKAAGNDVSVTDSTTIPAKD GTTVGSGNYIVTVGLGTPAKQLSLIFDTGSDVTWTQCQPCVRACYQQQERIFEPSQSTSYRNVSCEQAVCAALSSATGTFRLSHSFLSPILDPGNNGGCS SSTCVYGIQYGDSSFSVGFFASEKLTLNSTDVFDEFYFGCGKNNQGNFGGAAGLIGLGRDKLSLVSQTSDKYNKLFSYCLPPPLLEGIANYPRWKTAMEH FIRTSSADGEELWRMISQGVDGDDNRNVQLNAQTTHIVHCRLEFSLPTSLYPAKLLNGCGQGFKIYTNISHLHHPDALGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026244 [exp]	0	1
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	1.7	0.9073
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	4.2	0.8848
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	8.5	0.8860
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	9.2	0.8772
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	10.5	0.8732
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	11.5	0.8600
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	15.7	0.8401
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	15.9	0.8645
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	16.1	0.8493
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	16.5	0.8562

Compare expression of checked genes

Lus10026244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.