Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08480 73 / 3e-16 VQ motif-containing protein (.1.2) AT1G80450 54 / 4e-09 VQ motif-containing protein (.1) AT1G28280 50 / 2e-07 VQ motif-containing protein (.1.2) AT3G15300 45 / 1e-05 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042423 [exp] 253 / 7e-86 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1) Lus10020092 [exp] 126 / 2e-36 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1) Lus10026897 [exp] 79 / 4e-18 AT1G80450 67 / 4e-14 VQ motif-containing protein (.1) Lus10005543 [exp] 51 / 1e-07 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10015315 [exp] 48 / 2e-06 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10041929 [exp] 46 / 5e-06 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266700 [exp] 83 / 5e-20 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 76 / 4e-17 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.018G016500 [exp] 66 / 3e-13 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.004G134200 [exp] 57 / 3e-10 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 49 / 3e-07 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 43 / 6e-05 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.011G053700 [exp] 43 / 7e-05 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 41 / 0.0002 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10026247 pacid=23156462 polypeptide=Lus10026247 locus=Lus10026247.g ID=Lus10026247.BGIv1.0 annot-version=v1.0 ATGGAAACGGAGAGCCGCCGCCACGTGGTGACCACGGCGGCATTGCCACCGCCCTCCCCTATCTCATCCACCACCTTCGTCCAAGCCGACGCGGCAACGT TCCGGGAACTCGTCCAGAAGCTAACTGGTTTAGCTCCCGACGCCGACGCCAAGTTCCCGGTGACTCTCCCTTCCAGAACTGCTAAACAGGCTGCCAATCA TCACCATATCAACGGTAATAGTAGCCCCATAAACTCGCCGAGACGGTCGTCGTTCAAGCTCCAGGAACGGCGGCACACGATTCGAAAGCTTGAAATCAAG CTGAGCAGAGCGTCTCTCCGGAATAATAATAACAGTTCTGGAACGAGCCCGTGTTCTTCCCCGGGTAATTGCTTCTTGGCGGAGTCTCCGATTGCCAGCC CCGTGACGCCGCTGATGGCTTCCGGGGCAGCTGACTCGCCATTCTTTTCCAGCACGGAGACGACGCCGTCGACGGAGGCGACGGAGGAAGAAAGGGCGAT TGCGGAGAAGAGGTTTTATCTGCACCCATCTCCGTTGAGTACTCCGCGCGGAGGGAGCGAGGCGCCAGAGCTGCTTACTCTGTTTCCCCTGTCTTCTCCC CACGCTAAGGAGGAAAGATGA
AA sequence Show only first row Show all	>Lus10026247 pacid=23156462 polypeptide=Lus10026247 locus=Lus10026247.g ID=Lus10026247.BGIv1.0 annot-version=v1.0 METESRRHVVTTAALPPPSPISSTTFVQADAATFRELVQKLTGLAPDADAKFPVTLPSRTAKQAANHHHINGNSSPINSPRRSSFKLQERRHTIRKLEIK LSRASLRNNNNSSGTSPCSSPGNCFLAESPIASPVTPLMASGAADSPFFSSTETTPSTEATEEERAIAEKRFYLHPSPLSTPRGGSEAPELLTLFPLSSP HAKEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	0	1
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	1.7	0.9889
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	4.0	0.9879
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	4.9	0.9864
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	7.9	0.9874
					Lus10010257 [exp]	8.5	0.9873
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	8.9	0.9814
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	11.4	0.9870
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10015296 [exp]	12.7	0.9793
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	14.3	0.9775
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	14.7	0.9840

Compare expression of checked genes

Lus10026247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.