Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20070 141 / 4e-39 TTN9 titan9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042422 [exp] 472 / 2e-162 AT4G32140 390 / 3e-130 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049500 [exp] 262 / 2e-85 AT3G20070 187 / 8e-58 titan9 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026248 pacid=23156381 polypeptide=Lus10026248 locus=Lus10026248.g ID=Lus10026248.BGIv1.0 annot-version=v1.0 ATGGAGGCTTTGTATGCGAAGCTTTATGACAAGTACACTGTGTTAAAGGTTAGGCCTTTTGACTTAGTGAGGTTTACACTTTACAATTTGCCTGTTTCGT CTGCACTTCTGTCACCCGCAACTAACATAATCTTTTTTGGGCGATGGATGCAACAACAGAGGAAGAAAGCATCTGAATCGGATGATATCAACAGAGACCA GGAAGTGAAGTTCTTGAATTTTATGTCCGCTGCTGAAGAGCTTATACAACACTTGAAAGATGAAAACAATAAGCTAAATTCAGAAGTTAGTGAGTTGAGA AATGAAGTTAACTCAATCAGGTCGAAGAAGGATGAGGAATGTGCCGAGTACCAGAAGCGGCTTATGGAAGAGAATGAAAAGAGTAAAATGCTTTCTATTG AAGTAGAGAGGATTCAGAAACTACTTGATGAATCTTGCAGTGTAAAGGATGGCACGACCATACATCGAAATTCAGGTGAAGTATTAAACAGTTCAACGAG AAGAAAAGCTGGAAAGTCTAATAATGCAGGAGGAACGATTGACATTGATGAGTGTACAGCCACCCCTGCTCCTTACAAGCAACCTCTCGATCTCCTTAAT GCTGCTGGTCTAAACAACGATGGAAATGATGAAGTTATGTCACATGAGGTCTCTAATGGCTCAAGGATAATGACACGAAAGTGCAGCCGAGAAGCTAGGA CCCAAATGGAAGATGGTATTCCCATTCATGGTTCTGCTGGTCCATCTAAGAAAAGGATAAAAGAATCAGCTAGATATTCACCCAAGGTCTCCAGTGGGCT TTGCTTTGACAAGCTGCCCGCATGCTGTAGAACATCTTCTGATAAAACAGGTGATGGCGAGCCAACGAACTGCCAATTTCAAGCTCTTATTGAGTGCTTG CTGGGCATGAAATTATCTGCTGCGAATCAAAATGGAGGGATATGCATTTCAGCTATGCATCAAACAAGTGGTTATTCATTCAGTCTAACACGGGTCCAGA ACTCGACAACCGGAGAAGCAGAGCTTGTGTATCGGGTAGCAACACTAGGGACATTTGAGAGGGTAGCACCAGAGTGGATGAGGTCAGTGATAATGTTCAG TATTAGCATGTGCCCAGTCTTCTTTGAAAGATTAGCCCGGGTAATCAAGCTCCATCACTGA
AA sequence Show only first row Show all	>Lus10026248 pacid=23156381 polypeptide=Lus10026248 locus=Lus10026248.g ID=Lus10026248.BGIv1.0 annot-version=v1.0 MEALYAKLYDKYTVLKVRPFDLVRFTLYNLPVSSALLSPATNIIFFGRWMQQQRKKASESDDINRDQEVKFLNFMSAAEELIQHLKDENNKLNSEVSELR NEVNSIRSKKDEECAEYQKRLMEENEKSKMLSIEVERIQKLLDESCSVKDGTTIHRNSGEVLNSSTRRKAGKSNNAGGTIDIDECTATPAPYKQPLDLLN AAGLNNDGNDEVMSHEVSNGSRIMTRKCSREARTQMEDGIPIHGSAGPSKKRIKESARYSPKVSSGLCFDKLPACCRTSSDKTGDGEPTNCQFQALIECL LGMKLSAANQNGGICISAMHQTSGYSFSLTRVQNSTTGEAELVYRVATLGTFERVAPEWMRSVIMFSISMCPVFFERLARVIKLHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	0	1
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	1.4	0.9420
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	2.4	0.9265
AT1G73450			Protein kinase superfamily pro...		Lus10031902 [exp]	3.0	0.9000
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	4.5	0.9108
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	5.5	0.9083
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	6.3	0.9021
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	6.6	0.9282
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	10.8	0.8796
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	11.2	0.8890
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	14.0	0.8709

Compare expression of checked genes

Lus10026248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.