Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32140 313 / 2e-104 EamA-like transporter family (.1) AT3G07080 86 / 3e-18 EamA-like transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042422 [exp] 580 / 0 AT4G32140 390 / 3e-130 EamA-like transporter family (.1) Lus10041032 [exp] 311 / 9e-104 AT4G32140 607 / 0.0 EamA-like transporter family (.1) Lus10006194 [exp] 309 / 1e-102 AT4G32140 610 / 0.0 EamA-like transporter family (.1) Lus10011864 [exp] 70 / 6e-13 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 66 / 6e-12 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266400 [exp] 343 / 3e-116 AT4G32140 397 / 6e-137 EamA-like transporter family (.1) Potri.018G024700 [exp] 337 / 1e-113 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G257000 [exp] 331 / 1e-111 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.014G189500 [exp] 92 / 3e-20 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026249 pacid=23156503 polypeptide=Lus10026249 locus=Lus10026249.g ID=Lus10026249.BGIv1.0 annot-version=v1.0 ATGAGAATCTTCGACAAGTATGAACACCCTTTTGCCCTGACCTACCTTGGAGTGTCACTAATGCTGCTCCATCTCCCAATCGCATTCTTGAAAGACTGGT TGAGTAGCTTGTTCGGAGGGATTAAAGACGAGATTGAGTTACAGAGTCACAATAATTACTCTACCAACACATCTTCTTCTTCTTCAGAACCAGAAGCTAA TAAGATTATAAGTAGCTTCGATTTAAATCACAAGGATCTTAGTGAGAGGGAAGAAGGAAGGCCTTTGATTTCTAACGGCCAAGTTGTTGGCCAACATGGT ATTGATCATCAGTTGCTGAATAAGCAGATTGCTCCCCAACTTGGTTCCTCTGAAATTGCTAAATGTTGCTTGTATCTCGCTCCAATATGGTTCCTATCAG AGGCTATCTTCTTCAATGTGCTACAGTATCTATCGAACTTGGCACTTGTATATACAAGCGTTGCAAGTTCGACCTCAGGGTTATTCACCCTTGCATTTGG TGCAATTCTTCGCCAGGAGTTGGTCAATGCTGCTAAGGTGGTTGCTGTTGTTATTAGCATGGCTGGTGTTGCCATGACCACGGTTGGAAAGACTTGGGAA ATTGATGAAAGGTCGGCCACGCCTCAGACAAGGAAGCACTGTATTGAAGGCGACATACTTAGCCTATTTGCAGCCATAACATACGCCTTATTTACAGTTC TACTCAAGAGATCCACAGGAACACAAGGGCACAACGTTGATATGCAAAACTTCTTGGGATACATCGGCCTTTTCACCCTTGTTGGCTTTTCCCCCTTGTT GTTTTTTGGTGGCTGTGTAACGTGGCCTCTCAGTACAATAGGAATTGAGCCCAGATTTAGCTTTCCGGATTCAGCATCAATTGATGAGGCTGTGGTGTTT AATAGCTTCCTGGACAGCTTTTTAGCAGACTACTTTTGGGCTCCTTCTGTGATATGGACTACACCATTGGTGGCCACACTGGGGACGTCCTTGACAATTC CTCTGCCTATGGTGGATGATATGGTGATTCATGGTCAGCACTACTCGGCGACATACATCTTCGGCTGTGTCCAAGTATTTGCAGGTTTTGTTATAGCCAA TGTTTCAAACAAGTTCTCAGGGGAAGCGGAGTTGTAG
AA sequence Show only first row Show all	>Lus10026249 pacid=23156503 polypeptide=Lus10026249 locus=Lus10026249.g ID=Lus10026249.BGIv1.0 annot-version=v1.0 MRIFDKYEHPFALTYLGVSLMLLHLPIAFLKDWLSSLFGGIKDEIELQSHNNYSTNTSSSSSEPEANKIISSFDLNHKDLSEREEGRPLISNGQVVGQHG IDHQLLNKQIAPQLGSSEIAKCCLYLAPIWFLSEAIFFNVLQYLSNLALVYTSVASSTSGLFTLAFGAILRQELVNAAKVVAVVISMAGVAMTTVGKTWE IDERSATPQTRKHCIEGDILSLFAAITYALFTVLLKRSTGTQGHNVDMQNFLGYIGLFTLVGFSPLLFFGGCVTWPLSTIGIEPRFSFPDSASIDEAVVF NSFLDSFLADYFWAPSVIWTTPLVATLGTSLTIPLPMVDDMVIHGQHYSATYIFGCVQVFAGFVIANVSNKFSGEAEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	0	1
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	2.0	0.8999
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	2.0	0.8858
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	2.2	0.9121
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	3.9	0.8993
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	5.9	0.8779
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	6.9	0.8805
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	7.2	0.8632
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	7.4	0.8846
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	8.8	0.8673
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10021872 [exp]	9.2	0.8434

Compare expression of checked genes

Lus10026249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.