Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 716 / 0 unknown protein AT4G02210 251 / 9e-76 unknown protein AT5G05800 134 / 2e-33 unknown protein AT3G11290 109 / 5e-25 unknown protein AT2G19220 86 / 2e-17 unknown protein AT3G11310 86 / 4e-17 unknown protein AT4G02550 77 / 6e-15 unknown protein AT1G30140 61 / 4e-10 unknown protein AT5G27260 56 / 3e-08 unknown protein AT2G29880 52 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042421 [exp] 208 / 8e-64 AT2G24960 92 / 1e-22 unknown protein Lus10013421 [exp] 214 / 2e-62 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 195 / 3e-55 AT4G02210 395 / 1e-135 unknown protein Lus10025958 [exp] 93 / 2e-20 AT2G24960 102 / 4e-24 unknown protein Lus10014257 [exp] 92 / 7e-19 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016838 [exp] 68 / 1e-12 AT2G24960 71 / 4e-14 unknown protein Lus10002039 [exp] 63 / 2e-10 AT3G11290 91 / 2e-20 unknown protein Lus10022379 [exp] 61 / 1e-09 AT5G27260 74 / 1e-14 unknown protein Lus10004397 [exp] 61 / 2e-09 AT5G27260 77 / 6e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 874 / 0 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 508 / 1e-166 AT2G24960 514 / 2e-168 unknown protein Potri.002G200600 [exp] 266 / 2e-80 AT4G02210 471 / 1e-163 unknown protein Potri.004G172900 [exp] 92 / 5e-20 AT2G24960 96 / 1e-21 unknown protein Potri.003G190900 [exp] 77 / 3e-15 AT4G02550 407 / 8e-144 unknown protein Potri.005G252500 [exp] 76 / 1e-14 AT4G02210 74 / 9e-15 unknown protein Potri.011G163248 [exp] 71 / 3e-13 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 70 / 9e-13 AT4G02550 77 / 7e-16 unknown protein Potri.002G023800 [exp] 69 / 2e-12 AT2G24960 89 / 2e-19 unknown protein Potri.006G191850 [exp] 64 / 4e-12 AT4G02550 71 / 2e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026250 pacid=23156532 polypeptide=Lus10026250 locus=Lus10026250.g ID=Lus10026250.BGIv1.0 annot-version=v1.0 ATGAATGTCCAGCTTGATACAAACAATGATCGGCCAAGAACATACTGGACACCGCCAATGGAACGGTATTTTGTTGATCTAATGTTAGAACAAATGCACA GAGGAAACAGAAGTGGTCATACCTTTACCAAGCAAGCTTGGACAGACATGCTCACGGTGTTCAATTCCAAATTTGGATCCCAGTATGACAAAGATGTCCT CAAGAGTCGTTATACAAATCTTTGGAAGCAATTCAACGATGTACAGAACATTCTTGGTCAGAATGGATTCTCCTGGGACGAGACCAGGCAGATAGTGGCA GCTGACGACCATACGTGGAATGCTTATCTCAAGGTTCACCCCGATGCACGACCCTACAGAACGAAACCGGTGCTTAATTTCAGTGATTTGTGCATCATAT ATGGATACAGTCGGTCAAGTCATGATCTTGACTTCCAAGACGAAGTTCAGGGGTTCAAATTGGGTGATGTTCCACAATCGGGTAGTGAAGGTGTGAGGAC GGAGTGGAATGCTGATATGGACCAGTATTTCATAGAACTTATGCTGGATCAGATAGGACAAGGCAATAAGGTTGACGGTGCTTTTAGCAAGCAAGCTTGG GCAGATATGCTTTCTTTCTTCAATGCCAAGTTTAGTACTCAGCATTCGAAAAGGGTTTTAAGACACCGGTATAAGAAATTTTCGAAATACTACAGTGATC TAAAGGTTCTTGTAGGAGAAAATGGATTTTCATGGGATAAAACACAACGGAAGATCATAGCTGATGATATTATTTGGGATTCCTATATCAAGGAGCACCC GCAGGCACGAGCTTATAGAATGAAGACCTTACCTAATTACGATGGGTTGGTCGTCATATTTGGGAACGTGATTGATAGTGGAGTTTATGATAACTTGCAT CAGGAAAGAGATCTTGGTGTTGGCATTTCAGAAATGAATGATAGAGAAAATATTGAACGAACTCTTGGCAGTAACGATCGTACACGAACATTTTGGACGC CTCCTATGGACAGATATCTGATCGACTTGTTATTAGAGCAGGTTGATAAAGGAAACAAAATTGGACAGACATTTATCACTCAGGCTTGGATTGATATGCT TGCATCATTCAATTCCAAGTTTGAGGGCCATCATGACAAAGAGGTCCTGAAAAATCGGTACAAATATTTCAGGAAGCTGCACAATGAGATTACAAGTATT CTTCAGCGTAGTGGGTTTTCATGGGATGACTCGCGAGAAATGGTTATAGCTAAAGATCATATTTGGGATGCCTACAATAAGGAACACCCTGATGCTCGAT CTTTCAGAATTAGAACAGTGCCTGGCTACCAGAAATTGTCTGCAATATTCAAGCAGGAAAATTCTAATGGAAGATACAGCCGTTTGGCGCAGAATGCAGC CACCGATGATTGCAGTGAAGCACCTCTTCCAATGACTGGCAAGGATGATGATGGTCCTTGTGGAGTAGAGTGGCAGCCAGAAATGGATCGTTATTTCATT GACCTGATGCTGGAGGCGTTGCATCAAGGCCTTAAGTATGGTAACAGCTTCAATGAGCTAGCATGGGATCAAATGGTCGGGTCATTCAACAAAAGATTCA GCCTTTTGTGGGACAAAAGCATTTTAGAAACTCGATGTACGGAACTGATGAGAGAGTGTAATGACATCAGCGGTCTTCTCAGTTGCAATGAGTTTACATT TGATGAGAGCCGAAAAATGTTAGTTGCAGATGACAAAGTTTGGGAAGCTTATGCTGAGGGTCAACCAAGTGTCATAGCCTACAGAGACAAAGTCCTGGAT TCCTATATTGGTTTGTGTCGAATCCAGAGAAACGAAGCATCGAATAATGTAATGATTGATCAGGATATGTGGAATGATGATGACCATGGGGACCTAGTAG TAGAGATGAATGAAGAACTGAACTCTGAGAGGACGTCCAACGATCAGAAGAAACGAGGCAACAGCAGCGAGACATCGTATTGTACGAAGCTGCAGAAGTT TAATGCGGCAGGTGGCCCTTCAAAGCCACTTGAAACTGTTACAGCAGTTGTAGAGGACAGGGAAAACAGAAAGCAATTACCAATAGAAGCTGCAATTGAT GTGTTACAGGCAATGCCAGAAATGGACGATGAGCTATTACTGGATGCTTGCGATCTGTTGGAAGATGACAAGAAGGTAAAGACATTCTTGGCATTGGACA GTACATTGCGGAACAAATGGTTGCGAAGAAAGCTTCGCCCAGAGGCTAGCTCATTGCATTAG
AA sequence Show only first row Show all	>Lus10026250 pacid=23156532 polypeptide=Lus10026250 locus=Lus10026250.g ID=Lus10026250.BGIv1.0 annot-version=v1.0 MNVQLDTNNDRPRTYWTPPMERYFVDLMLEQMHRGNRSGHTFTKQAWTDMLTVFNSKFGSQYDKDVLKSRYTNLWKQFNDVQNILGQNGFSWDETRQIVA ADDHTWNAYLKVHPDARPYRTKPVLNFSDLCIIYGYSRSSHDLDFQDEVQGFKLGDVPQSGSEGVRTEWNADMDQYFIELMLDQIGQGNKVDGAFSKQAW ADMLSFFNAKFSTQHSKRVLRHRYKKFSKYYSDLKVLVGENGFSWDKTQRKIIADDIIWDSYIKEHPQARAYRMKTLPNYDGLVVIFGNVIDSGVYDNLH QERDLGVGISEMNDRENIERTLGSNDRTRTFWTPPMDRYLIDLLLEQVDKGNKIGQTFITQAWIDMLASFNSKFEGHHDKEVLKNRYKYFRKLHNEITSI LQRSGFSWDDSREMVIAKDHIWDAYNKEHPDARSFRIRTVPGYQKLSAIFKQENSNGRYSRLAQNAATDDCSEAPLPMTGKDDDGPCGVEWQPEMDRYFI DLMLEALHQGLKYGNSFNELAWDQMVGSFNKRFSLLWDKSILETRCTELMRECNDISGLLSCNEFTFDESRKMLVADDKVWEAYAEGQPSVIAYRDKVLD SYIGLCRIQRNEASNNVMIDQDMWNDDDHGDLVVEMNEELNSERTSNDQKKRGNSSETSYCTKLQKFNAAGGPSKPLETVTAVVEDRENRKQLPIEAAID VLQAMPEMDDELLLDACDLLEDDKKVKTFLALDSTLRNKWLRRKLRPEASSLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24960			unknown protein		Lus10026250 [exp]	0	1
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	2.8	0.8956
AT5G14850			Alg9-like mannosyltransferase ...		Lus10034759 [exp]	3.5	0.8520
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10021229 [exp]	3.9	0.8777
					Lus10033536 [exp]	6.4	0.8168
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	7.2	0.8830
AT5G41800			Transmembrane amino acid trans...		Lus10001908 [exp]	7.5	0.8627
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	7.9	0.8907
					Lus10041093 [exp]	8.8	0.8642
AT5G05340			Peroxidase superfamily protein...		Lus10034204 [exp]	9.4	0.8147
					Lus10026307 [exp]	10.8	0.7737

Compare expression of checked genes

Lus10026250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.