Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25060 1072 / 0 RNA recognition motif (RRM)-containing protein (.1) AT5G10800 996 / 0 RNA recognition motif (RRM)-containing protein (.1) AT1G54080 61 / 2e-09 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 61 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 60 / 6e-09 ATRBP47A RNA-binding protein 47A (.1) AT1G17370 58 / 2e-08 UBP1B oligouridylate binding protein 1B (.1.2) AT3G19130 56 / 1e-07 ATRBP47B RNA-binding protein 47B (.1) AT1G47500 55 / 2e-07 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 55 / 2e-07 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 53 / 7e-07 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042420 [exp] 1628 / 0 AT5G25060 1225 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10026892 [exp] 1345 / 0 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10012071 [exp] 59 / 7e-09 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10031277 [exp] 59 / 8e-09 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 59 / 1e-08 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10031844 [exp] 58 / 2e-08 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027911 [exp] 56 / 4e-08 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10014029 [exp] 57 / 5e-08 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10011924 [exp] 55 / 2e-07 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265700 [exp] 1251 / 0 AT5G25060 1182 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.018G017200 [exp] 1243 / 0 AT5G25060 1179 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.009G054400 [exp] 65 / 1e-10 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 58 / 2e-08 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 57 / 4e-08 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G017200 [exp] 56 / 6e-08 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G157300 [exp] 52 / 7e-08 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 56 / 1e-07 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.011G138400 [exp] 55 / 2e-07 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G166100 [exp] 54 / 2e-07 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module CL0221 [flax] [poplar] PF08312 [flax] [poplar] cwf21 cwf21 domain
Representative CDS sequence Show only first row Show all	>Lus10026251 pacid=23156464 polypeptide=Lus10026251 locus=Lus10026251.g ID=Lus10026251.BGIv1.0 annot-version=v1.0 ATGAGTTCATTCTCCATTACTCGCAAGAAAACCCCCTTTCAGAAACACAGAGAGGAAGAAGAGGCTAGGAAGAAGAGGGAAAAAGATGAAGCGGCTCGTG TGTATGCTGAATTTTTGGAGTCATTCCAAGGGGATACGGCTCCTGGTTCAAAGACTTTTGTCAGAGGTGGGTTGATCAATCCCAATGACAAAGTGAAGGA CGATTCCGAAGGTGAAAAGTCCAAAGATGGGGTATCTATTCCAAAGAAGGGAAGTAGGTACGTCCCATCCTTTTTACCCCCTTCCATGGCATCCAAAGGA AAGGAATCTGAGAAGAGGGTGGAGGAGGAAAGACCAAAGGACAGGGAAAAAGGAAAGAGCAGAAATATAGATCATTTTATGGAAGAGCTGAAGCATGAGC ATGAATTGAGGGAGAGAAGGAATCAGGAACGTGAGAGTTGGCGTGATGGACGTCCTAGTGAGAGTTCTCTTTCATCCAGTCGCTTCGATGAACTTCCTGA TGATTTTGATTCAAGTGGAAGGCTTCCAGGATCATTTGATGATGGTGATCCGCAAACTACCAATCTTTATGTGGGAAATCTTTCACCTCAGGTTGATGAG AATTTTCTTTTGCGCACTTTTGGGAGATTTGGGCCTGTCGCTAGTGTAAAGATAATGTGGCCTAGAACAGATGAAGAGCGCAGGAGAGAAAGAAATTGTG GATTTGTAGCATTTATGAACAGAGCTGAGGCTCAAGCAGCAAAAGATGAAATGCAAGGAGTGGTTGTTTACGAGTATGAGTTGAAAATTGGATGGGGCAA ATCTGTGGCTCTTCCTTCTCAAGCTCTGCCTGCTCCTCCTCCGGGTCAGATGGCCATCAGGAGCAAGGAGGGTGCCACTGTCATACTCTCCGGTCCATCA GGTCCACCTGTTACCTCTATTCCAAGTCAGAACTCTGAACTGGTTCTTACTCCAAATGTTCCTGATATAAAAGTTGTTCCACCTGATGATGTTCATATTC ACCATGTGATTGATACAATGGCTCTATATGTGCTTGATGGAGGATGTGCTTTTGAGCAAGCAATCATGGAAAGGGGCCGTGGGAATTCTATTTTTAACTT CCTCTTCGAGCTTGGCTCGAAGGAGCATACATACTACGTCTGGAGGGTCTATTCATTTGCACAGGGTGATACTCTTCAAAGATGGAGAACAGAACCCTTT ATCATGATAACTGGAAGTGGGAGATGGATACCGCCACCTTTGCCAGCTGTAAAATGTTCGGAGCATGAAAAGGATGCTGGTATTACCTATGCCGCTGGAA AAAGCAGGCGACTTGACACAGAACGAACACTGACAGATCCACAGAGGGATCAATTTGAGGATATGCTGCGCGCACTGACATTAGAAAGAAGTCAGATAAA GGATGCCATGGGTTTTGCATTGGACAATGCTGATGCTGCTGGAGAGATAGTGGAGGTCCTGACAGAATCGCTGACCCTGAAGGAAACTCCTATTCCAACA AAAGTTGCAAGGCTCATGCTTGTATCTGATGTCCTTCACAATAGTAGTGCGCCTGTAAAGAATGCTTCTGCATACCGGACCAAGTTTGAAGCTACTCTAC CTGATATAATGGAGAGCTTTAATGACTTGTACTGCAGCATAACTGGAAGAATGACGGCTGAGGCCCTCAAGGAGCGAGTTCTTAAAGTTCTTCAAGTATG GTCGGATTGGTTCCTGTTCTCAGATGCATATGTCAATGGTCTTCGGGCAACATTTCTTCGATCCAGTAATTCTGGCGTGGTCCCGTTTCATTCTTTGTGC GGTGATGCTCCTGAAATGGAGAAGATTGGTTCAGAAGAAGCTGGTAATGGAGTGAAGACCGACCAGGATGCTGCACTGGCAATGGGGAAAGGAGCAGCAA CAAAGGAGTTGATGAGCCTTCCCCTTGCTGAGCTGGAAAGGCGTTGCAGACATACCGGGTTATCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGATT ACTCAGCCTGGAAGAGGCAGAAAGGCAGAGGGGTCCCGAGTTAGACGATGACTTGAAATTTTCTCAAAGCCAGTCAACCTCTGGTAGACTTATGAGTGGT TACAAAGAAACTGGTGTCAACCCCGTGGGATTCTCTGGACAGGATAGTTCTAGGATGGATGACCTGCAGATAAAAGGCACTGGCACTGAACCCTTTGCTT CAACCCTTCAAATTCCTCAACCTGCGTTAAAACCTTTCACATTTAAGACAGATACTGTTTTACGATCCTCAAAATGGGCTAGAGATGATGCTGATAGTGA TGATGAACAAAAGAGAAACACTGGCGGTATAGGGTTGAGTTATTCATCTTCTGGAAGTGAAAATGCTGTTGATGATCCAGGCAAGGAAGATGAAGATGAG TTTGCTATGAATGTAGCTGTTTCAGCACTACCAGATAGCAGGATAAATGAAGAGCAGAGACAGAAGTTGAGGCGGTTGGAGGTTGCTTTGATAGAATATC GTGAATCCCTGGAGGAAAGAGGAATAAAAAGTTCAGAGGAAATTGAGAGAAAGGTAACAATCCAACGGAAAAGGTTGGAAGGTGAATATGGTCTCTTGAA TTCAAATGAAAACACAGCAGAAAACAACAAAAGAGCTTGGGAAAGGAAGGAGAGCAGTAACCAAGAATCGTCAAGAAAGCGGCAGAGGACCCAGCAGAGT GGAACTGAGAGTCCTCGTCGGAGACCTTCAGCAAGTGATAGGGATAGAGGTCATGAGATGGAGAATGAAGCACGAATTCGGCGTAGAAGTAAAGAAAGTG ATAATTATGACAGAGATAGAAACAGAGACAAGGATAGAGATGCTGAAAGGCGGAGGCGACCCAAGTAG
AA sequence Show only first row Show all	>Lus10026251 pacid=23156464 polypeptide=Lus10026251 locus=Lus10026251.g ID=Lus10026251.BGIv1.0 annot-version=v1.0 MSSFSITRKKTPFQKHREEEEARKKREKDEAARVYAEFLESFQGDTAPGSKTFVRGGLINPNDKVKDDSEGEKSKDGVSIPKKGSRYVPSFLPPSMASKG KESEKRVEEERPKDREKGKSRNIDHFMEELKHEHELRERRNQERESWRDGRPSESSLSSSRFDELPDDFDSSGRLPGSFDDGDPQTTNLYVGNLSPQVDE NFLLRTFGRFGPVASVKIMWPRTDEERRRERNCGFVAFMNRAEAQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPS GPPVTSIPSQNSELVLTPNVPDIKVVPPDDVHIHHVIDTMALYVLDGGCAFEQAIMERGRGNSIFNFLFELGSKEHTYYVWRVYSFAQGDTLQRWRTEPF IMITGSGRWIPPPLPAVKCSEHEKDAGITYAAGKSRRLDTERTLTDPQRDQFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLKETPIPT KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYCSITGRMTAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSSNSGVVPFHSLC GDAPEMEKIGSEEAGNGVKTDQDAALAMGKGAATKELMSLPLAELERRCRHTGLSLVGGREMMVARLLSLEEAERQRGPELDDDLKFSQSQSTSGRLMSG YKETGVNPVGFSGQDSSRMDDLQIKGTGTEPFASTLQIPQPALKPFTFKTDTVLRSSKWARDDADSDDEQKRNTGGIGLSYSSSGSENAVDDPGKEDEDE FAMNVAVSALPDSRINEEQRQKLRRLEVALIEYRESLEERGIKSSEEIERKVTIQRKRLEGEYGLLNSNENTAENNKRAWERKESSNQESSRKRQRTQQS GTESPRRRPSASDRDRGHEMENEARIRRRSKESDNYDRDRNRDKDRDAERRRRPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	1.7	0.9124
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	2.6	0.8614
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	4.2	0.8597
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	5.9	0.8176
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	6.0	0.8168
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	6.3	0.8549
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	7.7	0.8469
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	8.8	0.8884
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	8.9	0.8604
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	8.9	0.8663

Compare expression of checked genes

Lus10026251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.