Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25120 381 / 1e-122 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 375 / 1e-120 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25180 368 / 8e-118 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G48280 365 / 1e-116 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G13310 365 / 2e-116 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G48310 361 / 4e-115 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26300 360 / 1e-114 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25130 359 / 2e-114 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT1G13080 358 / 5e-114 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48270 358 / 7e-114 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042419 [exp] 698 / 0 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10002885 [exp] 645 / 0 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10018263 [exp] 622 / 0 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10030708 [exp] 550 / 0 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 528 / 3e-179 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 526 / 2e-178 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10042815 [exp] 514 / 7e-174 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 509 / 3e-171 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10030924 [exp] 493 / 1e-165 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 503 / 7e-170 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 503 / 1e-169 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 502 / 3e-169 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 499 / 3e-168 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 498 / 2e-167 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 496 / 4e-167 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 491 / 7e-165 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 469 / 1e-156 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 462 / 1e-153 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.015G028000 [exp] 419 / 4e-137 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026252 pacid=23156592 polypeptide=Lus10026252 locus=Lus10026252.g ID=Lus10026252.BGIv1.0 annot-version=v1.0 ATGGAAAATCTCATCATCTCCTTATTCAATGATTTCTCCTCACTATTCTTCCTTGTCACGTTAACAGCAGTTCTCCTTACAATCATCTTCTTCAGTCAAT CCAAAGCCGCCGCTTCGAAAAATCTGCCTCCAGGGCCATGGAAACTCCCTATAATAGGCAACCTCCACCAGCTAGCCGGCGACCAACAACCTCACCGAAG ACTCCACGACTTGGCACAGAAATACGGCCCTGACGTGATGCAGTTGCAGTTGGGAGAGTTGCTTCACATCGTCATTTCCTCACCGGAAGCTGCCAAACAG GTCATGAAAATTCACGACTTAGCGTTCGCTTCGAGGCCCTTTATGCTGGCCCCACATATCCTCTACGACGGTACCAAGGACATAGCATTCGCGCCTTACA GAGAGTACTGGAGACAGATGCGCAAGGTCTGCGTGCTCGAACTACTAAGCACCAAACGCGTTCTTTCCTTCCGTCCAATCAGGGAGGAAGAGGTGTCGAA GCTCGTGGACAATATCTCTAGTAGCGCCCATGAGCCTGTGAATTTAACTGCCATGGTGACCTTGCTGACGAGTTGCGTGACATCCAGGGCAGCATTCGGC AAAGCGCAGGAGCTGAACGATGATTTCATGATGGTTGTCGACAACATTTCTGATGTCCTTGCATGTTTCACTGGCTTCAAAGCAACACTTGAAGAGATGC ATAGAGCATCTGGTTCCATTCTTGACCGCGTAATCGAGGAACATATATCGAAAAGGAGTAGCGCGAGGAGGGACAACGATGATGTCGAAAAGCAAGACCT TGTAGATGTCCTCTTGAATCTTCGGGAAAACCAGAACCTTGGAGTTTCCATATCAAAAGAAGTTATCAAAGCCGTCACTTTGGAAATGTTTCTCGGAGGA ACTGAGACCTCATCAACAGCAATAGAGTGGACTATGTCTGAAGTGGTGAAGGATCCTAGAGTGTTGCAAAAAGCACAAGAAGAAGTACAGAAGCCCGGAA GGTGTTCAGCGACATCGCAAGTGTGGAGGAGGAAAGTCTTCACAAATTACTTGGACAGAATTATCTCTGAAAGTTTAAGATTACACCCTCCACTGCTTCT ACCTGTCCCTGAGAAAGACTTAGTTATAGCTAGCCAGCCAAGCTTGTTCGTTCTAGCTAAGCCAGATAGTTTCACCATGGAATATCTCCACCATAAGTTC ATCTCTTTATTCACTGAGTTCTCCCCACCATTCTTCCTTCTCACGTTAACAATAATCCTTCTTTCAACGTCCTTAGTTATCTTCCGCAGTCGATCCAAAT CCTCAGCTTCAAATCTGCCTCCAGGGCCATGGAAGCTCCCCATAATAGGTAACCTCCACCAGCTAATCGGCGACCAACCTCACCGAAGACTCAACGACTT GGCACAGAGATACGGCCCAGATGTGATGCAGTTGCAATTGGGAGAACTTCTTCACATCGTCATTTCCTCACCTGAAGCTGCCAGACAGGTCATGAAAACC CACGACTTAGCTTTCGCTTCAAGGCCTTCTATCCTCGCCCCAAACATCCTCTTTGACGGTTGCAAGGACATAGCTTTCGCACCTTATGGAGAGTACTGGA GACAGATGCGCAAGCTCTGCGTGATCGAACTTCTCAGCAACAAACGTGTTCTTTCCTTCCGTGGAATTAGGGAGGAAGAAGTTTCAAAGCTCGTGGACCA TCTCTCTAGCAGCGCCAGGATTGATGACAAGCCTGTGGATTTAACTGCCTTGGTGACCATGCTAACGGGCTGCGTGACATCCAGGGCAGCGTTCGGGAAA GCACATGAGCTAAACGACGCCTTCATGATTGTTGTCAACAACCTTTCAGCTGTTCTTGCAGGTTTCAAAATATCCGACCTCTATCCTTCCCTCAAATTCC TTGCTAGGTTCACCGGGTTCAAAGCAACCCTTGAAAATATGCATGAAGCGTCTCATTCCATTCTTGACCGCATCATTGAGGAACATAAATCGAAAAGGAC TAAAGATGGTGAAGACGATGACGTCAAAAATCAGGACCTTATGGATGTCTTTCTGAATCTTCAGAAAAACCAGAACCTTGGAGTTTCCATAACAGATGAA GTTATAAAAGCAGTCACTTTAGAACTGTTTCTTGCTGGAATTGAGACCACATCGACAACAATAGAGTGGACTATGTCTGAAGTGGTGAAGGATCTTAGAG TGTTGCAAAAGGCACAAGAAGAAGTAAGGAAGGTGTTCAACGATGCCCCAAGAGTGGAGGAGGCAAGTCTTCACAAATTGAACTACTTGGACATGATTAT CACCGAAAGCTTAAGATTACACCCTCCACTACCTTTACTCATTTCAAGAGAGAATGATGATAAGGCAGAACTCAATGGCTACGAGATACCCATGGGAACC AAAGTCTTTGTGAATGCTTGGGCAATCAATCGAGATACTCGACATTGGTCCGATCCCCATAAATTCTACCCTGAAAGATTTATGGATTGCTCAACAGACT ACAAGGGGAATTACTATCAGTTCATTCCGTTCGGTGCTGGACGGAGAATGTGCCCTGGAGTTTCGTTTGGGCTTTCAATCGTTAAACTAACTTTAGCTAA TTTGCTCTTTCATTTCGACTGGAAACTTCCCGACAACACCAAACAAGAAGACCTTGATATGACTGAAGTCTTAGGAGGGTTGCTCAAGAGAAAATATGCT CTGCGTCTTATCCCAATACTATACAAGGCTTGA
AA sequence Show only first row Show all	>Lus10026252 pacid=23156592 polypeptide=Lus10026252 locus=Lus10026252.g ID=Lus10026252.BGIv1.0 annot-version=v1.0 MENLIISLFNDFSSLFFLVTLTAVLLTIIFFSQSKAAASKNLPPGPWKLPIIGNLHQLAGDQQPHRRLHDLAQKYGPDVMQLQLGELLHIVISSPEAAKQ VMKIHDLAFASRPFMLAPHILYDGTKDIAFAPYREYWRQMRKVCVLELLSTKRVLSFRPIREEEVSKLVDNISSSAHEPVNLTAMVTLLTSCVTSRAAFG KAQELNDDFMMVVDNISDVLACFTGFKATLEEMHRASGSILDRVIEEHISKRSSARRDNDDVEKQDLVDVLLNLRENQNLGVSISKEVIKAVTLEMFLGG TETSSTAIEWTMSEVVKDPRVLQKAQEEVQKPGRCSATSQVWRRKVFTNYLDRIISESLRLHPPLLLPVPEKDLVIASQPSLFVLAKPDSFTMEYLHHKF ISLFTEFSPPFFLLTLTIILLSTSLVIFRSRSKSSASNLPPGPWKLPIIGNLHQLIGDQPHRRLNDLAQRYGPDVMQLQLGELLHIVISSPEAARQVMKT HDLAFASRPSILAPNILFDGCKDIAFAPYGEYWRQMRKLCVIELLSNKRVLSFRGIREEEVSKLVDHLSSSARIDDKPVDLTALVTMLTGCVTSRAAFGK AHELNDAFMIVVNNLSAVLAGFKISDLYPSLKFLARFTGFKATLENMHEASHSILDRIIEEHKSKRTKDGEDDDVKNQDLMDVFLNLQKNQNLGVSITDE VIKAVTLELFLAGIETTSTTIEWTMSEVVKDLRVLQKAQEEVRKVFNDAPRVEEASLHKLNYLDMIITESLRLHPPLPLLISRENDDKAELNGYEIPMGT KVFVNAWAINRDTRHWSDPHKFYPERFMDCSTDYKGNYYQFIPFGAGRRMCPGVSFGLSIVKLTLANLLFHFDWKLPDNTKQEDLDMTEVLGGLLKRKYA LRLIPILYKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10026252 [exp]	0	1
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	8.1	0.8988
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	11.1	0.8845
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	12.8	0.8714
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	16.7	0.8667
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	18.8	0.8681
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10002554 [exp]	21.2	0.8224
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10017440 [exp]	22.9	0.7682
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	24.5	0.8245
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	28.8	0.8464
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	29.5	0.8417

Compare expression of checked genes

Lus10026252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.